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The map label for this gene is ycfQ [C]

Identifier: 153952460

GI number: 153952460

Start: 1404665

End: 1405297

Strand: Direct

Name: ycfQ [C]

Synonym: JJD26997_1589

Alternate gene names: 153952460

Gene position: 1404665-1405297 (Clockwise)

Preceding gene: 153951520

Following gene: 153951714

Centisome position: 76.13

GC content: 25.91

Gene sequence:

>633_bases
ATGAACCCAAATAGAACACCATCACAAAAAGTTTTAGCTAGACAAGAGAAAATCAAAACAGTGGCCTTAGAGCTTTTTTT
AACAAAAGGTTACCAAAAAACAAGTTTGAGTGATATTATTAAATTATCTGGAGGATCTTATTCTAATATTTATAATAGTT
TTAAAAGCAAAGAAGGATTATTCTTTGAAATTTTAGATGACATATGTAAAAAACATTTTCATCTTATTTATTCCAAAACA
CAAGAAATTGAAAATGGCACTTTAAAAGAAATTTTAACCTCTTTTGGCTTGGCTTTTATAGAAATTTTTAATCAACCAGA
AGCTGTAGCTTTTGGTAAAATTGTTTATTCTCAAGTTTATGATAAAGATAGACATCTTGCTAATTGGATAGAAAACAATC
AGCAAAATTTTTCCTATAACATACTTATGGATTTTTTCAAGCAACAAAATAATTCTTATATGAAAAAAAATACAGAAAAA
CTTGCTGTTCTTTTTTGCACTATGTTAAAAGAACCTTATCATCATCTTAATGTTTTAATTAATGCTCCTTTGAAAAATAA
AAAAGAACAAAAAGAACATGTTGAATTTGTTGTAAACGTTTTTCTAAATGGGATTAATAGCTCCAAAGCTTAA

Upstream 100 bases:

>100_bases
CCTTTACATATAAAAGCTTACGCGAAGGATAATAAAAAAATTTCGGTTTTTAGAAAAAGTATATTTGTATACCCCAAAAA
CACTCTTATAAAGGATAAAA

Downstream 100 bases:

>100_bases
AAAATAATTTTATTAACCAAAATTAAGATATAATTAGCCAAAAATTTTTGTAATAAATATTACAATTTTTAATTTAATTT
TTCAAGGCAAAATCATGAAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Bacterial Regulatory Protein; TetR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNPNRTPSQKVLARQEKIKTVALELFLTKGYQKTSLSDIIKLSGGSYSNIYNSFKSKEGLFFEILDDICKKHFHLIYSKT
QEIENGTLKEILTSFGLAFIEIFNQPEAVAFGKIVYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNTEK
LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA

Sequences:

>Translated_210_residues
MNPNRTPSQKVLARQEKIKTVALELFLTKGYQKTSLSDIIKLSGGSYSNIYNSFKSKEGLFFEILDDICKKHFHLIYSKT
QEIENGTLKEILTSFGLAFIEIFNQPEAVAFGKIVYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNTEK
LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA
>Mature_210_residues
MNPNRTPSQKVLARQEKIKTVALELFLTKGYQKTSLSDIIKLSGGSYSNIYNSFKSKEGLFFEILDDICKKHFHLIYSKT
QEIENGTLKEILTSFGLAFIEIFNQPEAVAFGKIVYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNTEK
LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24373; Mature: 24373

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPNRTPSQKVLARQEKIKTVALELFLTKGYQKTSLSDIIKLSGGSYSNIYNSFKSKEGL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCH
FFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEIFNQPEAVAFGKIVYSQVY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNTEKLAVLFCTMLKEPYHHLNVLI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHEEE
NAPLKNKKEQKEHVEFVVNVFLNGINSSKA
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPNRTPSQKVLARQEKIKTVALELFLTKGYQKTSLSDIIKLSGGSYSNIYNSFKSKEGL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCH
FFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEIFNQPEAVAFGKIVYSQVY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNTEKLAVLFCTMLKEPYHHLNVLI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHEEE
NAPLKNKKEQKEHVEFVVNVFLNGINSSKA
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA