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The map label for this gene is bioD [H]

Identifier: 153952444

GI number: 153952444

Start: 1465054

End: 1465659

Strand: Direct

Name: bioD [H]

Synonym: JJD26997_1658

Alternate gene names: 153952444

Gene position: 1465054-1465659 (Clockwise)

Preceding gene: 153951026

Following gene: 153952135

Centisome position: 79.4

GC content: 27.56

Gene sequence:

>606_bases
GTGCAAATTTATGTAGGTGGAATACATACTAATGTAGGAAAAACACATTTTTGTGCGAATTTTTGTGCGAATTTTAACTA
TGATTATTTTAAACTCATTCAAGCAGGAACTCCAACAGATAGTGAGTTTATTGTAAAATTTAGCCCGAAAACAAAGATTT
TTAAAGAGGGTGTTTTTTTGCAAACTCCAGCTTCTCCTCATCTTGGAAAAATCAAAGAAAAACTTGATTATAAAGCCTTA
GATATCATTTTACCAAAAAGTGAAAATCTACTTATTGAGCTTGCGGGTGGGCTTTTTTCTCCTATGGATGAAAATTATAC
TATGATTGATTTTATGAATATTTTTAAACGCCCTACGATTTTAGTAGCAAAATACTATCTTGGAAGTATTAATCATATTT
TGCTTAGCATTGAAGCTTTAAAACAAAGAAATATCAATCTTTTAGCCCTTGTGATAATGGGTAAAAAAGATATCTTACAA
GATGATTTTATAAAAAATTATGCAAAAATTCCTATAATCAATCTTGATTTTTTTGATGAAAATAGCATTTTAAATAAAGA
TTTTAAAGAGCAAATGCAAGAAATTTTACAACTTAAAATTCCTTAA

Upstream 100 bases:

>100_bases
GCTTTTTTATAAAGAAAGTAAAAGTTTTTTAAAACTTTTTTTAATCGCTGTGATTATTGCTTGTACGGTAAGTTTAAAAT
TTCTTTCTTAAGGATTTTTT

Downstream 100 bases:

>100_bases
AAATCTGCTCTAAACTCTCTACTACATAAACGATTTGTTCTTTTGTGATGATGTAAGGAGGCATAAAATAAATCGTATTT
GCCAAAGGTCTTAAAAGCAA

Product: dethiobiotin synthetase

Products: NA

Alternate protein names: DTB synthetase; DTBS; Dethiobiotin synthase [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQIYVGGIHTNVGKTHFCANFCANFNYDYFKLIQAGTPTDSEFIVKFSPKTKIFKEGVFLQTPASPHLGKIKEKLDYKAL
DIILPKSENLLIELAGGLFSPMDENYTMIDFMNIFKRPTILVAKYYLGSINHILLSIEALKQRNINLLALVIMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP

Sequences:

>Translated_201_residues
MQIYVGGIHTNVGKTHFCANFCANFNYDYFKLIQAGTPTDSEFIVKFSPKTKIFKEGVFLQTPASPHLGKIKEKLDYKAL
DIILPKSENLLIELAGGLFSPMDENYTMIDFMNIFKRPTILVAKYYLGSINHILLSIEALKQRNINLLALVIMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP
>Mature_201_residues
MQIYVGGIHTNVGKTHFCANFCANFNYDYFKLIQAGTPTDSEFIVKFSPKTKIFKEGVFLQTPASPHLGKIKEKLDYKAL
DIILPKSENLLIELAGGLFSPMDENYTMIDFMNIFKRPTILVAKYYLGSINHILLSIEALKQRNINLLALVIMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP

Specific function: Bioconversion of pimelate into dethiobiotin. [C]

COG id: COG0132

COG function: function code H; Dethiobiotin synthetase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dethiobiotin synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004472 [H]

Pfam domain/function: NA

EC number: =6.3.3.3 [H]

Molecular weight: Translated: 23059; Mature: 23059

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIYVGGIHTNVGKTHFCANFCANFNYDYFKLIQAGTPTDSEFIVKFSPKTKIFKEGVFL
CEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHCCEEE
QTPASPHLGKIKEKLDYKALDIILPKSENLLIELAGGLFSPMDENYTMIDFMNIFKRPTI
ECCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEHHHHHHHHCCCEE
LVAKYYLGSINHILLSIEALKQRNINLLALVIMGKKDILQDDFIKNYAKIPIINLDFFDE
EEEHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCC
NSILNKDFKEQMQEILQLKIP
CCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQIYVGGIHTNVGKTHFCANFCANFNYDYFKLIQAGTPTDSEFIVKFSPKTKIFKEGVFL
CEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHCCEEE
QTPASPHLGKIKEKLDYKALDIILPKSENLLIELAGGLFSPMDENYTMIDFMNIFKRPTI
ECCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEHHHHHHHHCCCEE
LVAKYYLGSINHILLSIEALKQRNINLLALVIMGKKDILQDDFIKNYAKIPIINLDFFDE
EEEHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCC
NSILNKDFKEQMQEILQLKIP
CCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA