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The map label for this gene is rnfB [H]

Identifier: 153949540

GI number: 153949540

Start: 2197195

End: 2197818

Strand: Direct

Name: rnfB [H]

Synonym: YpsIP31758_1895

Alternate gene names: 153949540

Gene position: 2197195-2197818 (Clockwise)

Preceding gene: 153949628

Following gene: 153947990

Centisome position: 46.52

GC content: 52.72

Gene sequence:

>624_bases
ATGATGTCTTTATGGATCGCCATAGGCGCACTCAGTACATTGGCGCTGGTCTCCGGCGTGGTGCTCGGCTTCGCCGCCCG
TCGTTTCCAGGTTGATGAAGATCCGGTCGTCGAGCAAGTGGATGCCATTTTGCCACAGAGCCAATGTGGGCAATGTGGTT
ACCCTGGTTGCCGCCCCTATGCCGAGGCGGTCTCTACTGGTGGTGAAAAAATCAACAAATGCGCGCCGGGTGGCGAGCAG
GTGATGCTGAAACTGGCCGAATTATTGGCGGTCGAGCCACAACCGTTGGATGGTGATGAAAGTGCAGCCCATCCACAACG
TAAAGTGGCGTTTATCGATGAAGCAAACTGCATCGGTTGTACTAAATGTATTCAGGCCTGTCCGGTTGATGCCATCATCG
GGGCGACACGGGCTATGCACACCGTATTATCTGATCTCTGCACTGGCTGCGACCTGTGTGTTGCCCCCTGCCCAACCGAT
TGTATTGAAATGATCCCGGTTGCTACCACCACCGCCAACTGGAAATGGGATTTGAATACCATTCCGGTCAAGAATCTGCC
TAATCAGTTGGTCGCCTCACAAATGATTCCGGTAAAAATGATAGACGTGGAGCAACATGTTTAA

Upstream 100 bases:

>100_bases
CGGATGTCCCTGCGCCCTTCCGTGGGTCTTCTATCGCCTTAATCACTGCCGGGCTGATGTCTCTGGCCTTTATGGGCTTT
ACCGGTTTGGTGAAGTTCTA

Downstream 100 bases:

>100_bases
GCTGTTTACTGCCCGCCAACATGACAAGATCTGGGATTTCGATGGCGGTATCCACCCACCAGAAATGAAACTGCAATCAA
GCACGGTCCCCATGCGTATC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPNQLVASQMIPVKMIDVEQHV

Sequences:

>Translated_207_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPNQLVASQMIPVKMIDVEQHV
>Mature_207_residues
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPYAEAVSTGGEKINKCAPGGEQ
VMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGCTKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTD
CIEMIPVATTTANWKWDLNTIPVKNLPNQLVASQMIPVKMIDVEQHV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=187, Percent_Identity=72.192513368984, Blast_Score=290, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 22035; Mature: 22035

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
6.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVSTGGEKINKCAPGGEQVMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGC
HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTANWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCEECCCCEECCCC
IPVKNLPNQLVASQMIPVKMIDVEQHV
CCHHCCCHHHHHHHCCCEEEECCCCCC
>Mature Secondary Structure
MMSLWIAIGALSTLALVSGVVLGFAARRFQVDEDPVVEQVDAILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCCHH
AEAVSTGGEKINKCAPGGEQVMLKLAELLAVEPQPLDGDESAAHPQRKVAFIDEANCIGC
HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTANWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCEECCCCEECCCC
IPVKNLPNQLVASQMIPVKMIDVEQHV
CCHHCCCHHHHHHHCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA