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The map label for this gene is rnfA [H]

Identifier: 153949628

GI number: 153949628

Start: 2196614

End: 2197195

Strand: Direct

Name: rnfA [H]

Synonym: YpsIP31758_1894

Alternate gene names: 153949628

Gene position: 2196614-2197195 (Clockwise)

Preceding gene: 153949168

Following gene: 153949540

Centisome position: 46.51

GC content: 50.0

Gene sequence:

>582_bases
ATGACTGAATACCTGCTCCTATTTGTCGGCACAGTTTTGGTAAATAACTTTGTTCTGGTCAAGTTTCTTGGCCTGTGCCC
GTTTATGGGCGTCTCTAAAAAACTGGAAACCGCCATTGGTATGGGTCTGGCGACCACTTTCGTGCTGACATTGGCATCGG
TTTGCGCCTGGATGGTCAATAGCTTTATTTTGCTGCCACTCGGCCTGATCTATTTGCGAACACTGGCCTTCATTTTAGTT
ATCGCTGTCGTGGTGCAATTCACCGAGTTGGTGGTCCGCAAAACCAGCCCGACACTTTACCGCTTGCTGGGTATCTTTCT
CCCCCTGATCACCACCAATTGTGCCGTTTTAGGGGTCGCACTACTCAATGTGAATCAATCGCATAATTTCATGCAATCCG
CGGTCTATGGTTTTAGTGCTGCTGCGGGTTTCTCTTTGGTCATGGTGTTATTTGCCGCTATTCGTGAGCGCCTGGCTGTG
GCGGATGTCCCTGCGCCCTTCCGTGGGTCTTCTATCGCCTTAATCACTGCCGGGCTGATGTCTCTGGCCTTTATGGGCTT
TACCGGTTTGGTGAAGTTCTAA

Upstream 100 bases:

>100_bases
ATAAAGGGAAAATCGCAATAACCCTGCATTTCATCTGTTGTCGTCGGGCCGTCAATTTTGGATAATAGGCGGCTTTTATT
TTTTTAGGTCCCGCAATGCA

Downstream 100 bases:

>100_bases
TGATGTCTTTATGGATCGCCATAGGCGCACTCAGTACATTGGCGCTGGTCTCCGGCGTGGTGCTCGGCTTCGCCGCCCGT
CGTTTCCAGGTTGATGAAGA

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTEYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAWMVNSFILLPLGLIYLRTLAFILV
IAVVVQFTELVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFMQSAVYGFSAAAGFSLVMVLFAAIRERLAV
ADVPAPFRGSSIALITAGLMSLAFMGFTGLVKF

Sequences:

>Translated_193_residues
MTEYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAWMVNSFILLPLGLIYLRTLAFILV
IAVVVQFTELVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFMQSAVYGFSAAAGFSLVMVLFAAIRERLAV
ADVPAPFRGSSIALITAGLMSLAFMGFTGLVKF
>Mature_192_residues
TEYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAWMVNSFILLPLGLIYLRTLAFILVI
AVVVQFTELVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNQSHNFMQSAVYGFSAAAGFSLVMVLFAAIRERLAVA
DVPAPFRGSSIALITAGLMSLAFMGFTGLVKF

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=88.5416666666667, Blast_Score=343, Evalue=4e-96,
Organism=Escherichia coli, GI1787919, Length=161, Percent_Identity=30.4347826086957, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20783; Mature: 20651

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAWMVN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFILLPLGLIYLRTLAFILVIAVVVQFTELVVRKTSPTLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNQSHNFMQSAVYGFSAAAGFSLVMVLFAAIRERLAVADVPAPFRGSSIALITAGLM
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVKF
HHHHHHHHHHHCC
>Mature Secondary Structure 
TEYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAWMVN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFILLPLGLIYLRTLAFILVIAVVVQFTELVVRKTSPTLYRLLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNQSHNFMQSAVYGFSAAAGFSLVMVLFAAIRERLAVADVPAPFRGSSIALITAGLM
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVKF
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]