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The map label for this gene is rnfC

Identifier: 153947990

GI number: 153947990

Start: 2197811

End: 2199907

Strand: Direct

Name: rnfC

Synonym: YpsIP31758_1896

Alternate gene names: 153947990

Gene position: 2197811-2199907 (Clockwise)

Preceding gene: 153949540

Following gene: 153950517

Centisome position: 46.53

GC content: 52.93

Gene sequence:

>2097_bases
ATGTTTAAGCTGTTTACTGCCCGCCAACATGACAAGATCTGGGATTTCGATGGCGGTATCCACCCACCAGAAATGAAACT
GCAATCAAGCACGGTCCCCATGCGTATCGCGCCTTTGCCAGATCAATTAATTATCCCTTTGCAACAGCACTTGGGGCCGG
AGGGTGAACTGCGGGTACGGGCGGGTGAGCAAGTATTGAAGGGGCAGCCACTGACCGTTGGCCGTGGCCGTACAGTTCCA
GTTCATGCCCCTACTTCAGGGATGATCACTGCGATTGCTCCACATACCACCGCCCACCCATCCGGCTTAGCTGAACTTTG
CGTCCATATTACCCCTGATGGTGAAGATCGCTGGCGTGAACAACAGCCGTGGGCTGACTATCGCCAGCGCGATAAAATGG
CCCTGCTTGACCGTATTCACCAAGCAGGCATTGCCGGTTTGGGGGGCGCAGGTTTCCCAACTGCCAGCAAGCTGCAAGGG
GGGTTGAATGGGATTATCACGTTAATCATCAACGCGGCGGAATGCGAACCCTATATCACTGCTGATGATCGTTTGATGCA
AGAGCATGCTGATGAAGTCATAACGGGTATCCATATTTTACGGCATTTGTTGCAGCCTCAGCAGGTACTGATTGGGATAG
AAGATAATAAGCCAGAGGCGATTGCGGCACTGCAACGGGCATTACGTGGGCAAGACGACATTCACTTACGTGTTGTCCCC
ACCAAGTACCCATCAGGGGGAGCCAAGCAATTAACCAAGATTCTGACGGGCAAAGAAGTCCCCTTTGGCAAGCATTCGTC
ATCCATTGGTGTATTAATGCAAAACGTCGGTACTGTCGTGGCTATCAAACGGGCAGTTATCGACGATGAACCACTGATTG
AGCGGGTGGTGACATTAACCGGTGATGCCCTGTCATCGCCTGGAAACTTTTGGGCCAGAATCGGCACACCAGTACTGTAT
TTACTTAAATTGGCCGGTTTCAAGCCTCAAAACCCGCCAATGGTGATTATGGGGGGGCCATTGATGGGCTTTACTTTGCC
CAGTTTGGATGTCCCCATCGTTAAAATCAGTAACTGCATTTTAGCGCCCGCTGAAACGGAAATGGGCCTATCTGAACCAG
AGCAATCCTGTATCCGTTGCGGTTTATGTGTTGACGCCTGCCCTGCAGGATTATTGCCTCAACAACTCTACTGGTTTAGC
CGTGGTGAAGAACACGAAAAGGCCCGCAATCATAATTTGTTCGATTGTATAGAATGCGGTGCCTGCGCCTATGTTTGCCC
CAGTAATATTCCTCTAGTGCAATATTACCGGCAAGAAAAAGCAGAAATACGCGCCCTCGATCAGGAGAGCGCTCGTGCAG
CCGAAGCTAAAGCACGATTTGAAGCGAAGCAAGCCCGTCTGGCGCGGGAGAAGTTGGCCAGAGAATTACGGCATAAGCAA
GCCGCTGTCAAATTGACCGATGCTGATCAACAAACAGTTGACGCTGCTGTCAGTCGTTTGACCCGCCAATCTGATGGCTC
AGAGTCTGTTATCAATATCCCCGCAGGGCAAATGCCGGATAACAGTGCAGTTATTGCCGCCCGTGAAGCCCGAAAAGCAC
AGGCCAGAGCACGGCAGGCAGAGAAACAGCAGGCACGATCAACGGAAGAAACAACCGACGTTGTTGATCCTCGTCAAGCC
GCAGTAGCCGCCGCTATCGCCAGAGTCAAAGCTAAGAAAGCCGCTCAGGTACAACACGTTACCACTGACGTGGCGGAGGC
GGGATCAGAGGCCATAGCAGAAGACCCACGGAAAGCCGCAGTAGCCGCCGCTATTGCCAGAGTCAAAGCAAAGAAAGCCG
CTCAGGCACAACACGTTACCACTGACGTGGCGGAAGCGGGATCAGAGGCCATGGCAGAAGACCCACGGAAAGCCGCAGTA
GCCGCCGCTATTGCCAGAGTCAAAGCAAAGAAAGCCGCTCAGGCACAACACGTTACCACTGACGTGGCGGAGGCGGGATC
AGAGGCCATAGCAGAAGATCCACGGAAAGCCGCTGTGGCCGCCGCTATCGCCAGAGTCAAAGCCAAGAAAGCCGCTCAAG
CGATAAATCCTGACTAA

Upstream 100 bases:

>100_bases
AACTGGAAATGGGATTTGAATACCATTCCGGTCAAGAATCTGCCTAATCAGTTGGTCGCCTCACAAATGATTCCGGTAAA
AATGATAGACGTGGAGCAAC

Downstream 100 bases:

>100_bases
AACATCTCAGTTTGGGAAAACGCTCGGCCACAATTACCTATCATTCTGGCTGGATACTCATTCTGGCTAAATAACCATAA
TGGCTAAATGATGCTAATCG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQMPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAINPD

Sequences:

>Translated_698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQMPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAINPD
>Mature_698_residues
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVRAGEQVLKGQPLTVGRGRTVP
VHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWREQQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQG
GLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVP
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLY
LLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQMPDNSAVIAAREARKAQARARQAEKQQARSTEETTDVVDPRQA
AVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAV
AAAIARVKAKKAAQAQHVTTDVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAINPD

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=562, Percent_Identity=66.1921708185053, Blast_Score=761, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_YERP3 (A7FHZ3)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400871.1
- ProteinModelPortal:   A7FHZ3
- SMR:   A7FHZ3
- STRING:   A7FHZ3
- GeneID:   5387166
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1896
- NMPDR:   fig|349747.3.peg.641
- eggNOG:   COG4656
- HOGENOM:   HBG537098
- OMA:   PQQLFWH
- ProtClustDB:   PRK05035
- BioCyc:   YPSE349747:YPSIP31758_1896-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 75019; Mature: 75019

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVR
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEE
AGEQVLKGQPLTVGRGRTVPVHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWRE
CCHHHHCCCCEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHEEECCCCCHHHHHC
QQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQGGLNGIITLIINAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHEEEHHEEECCCCCCEEC
ADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEE
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHC
GDALSSPGNFWARIGTPVLYLLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCI
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCEE
LAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQMPDNSAVIAAREARKAQARARQA
HEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EKQQARSTEETTDVVDPRQAAVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAA
HHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
VAAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAQHVTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAINPD
HHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFKLFTARQHDKIWDFDGGIHPPEMKLQSSTVPMRIAPLPDQLIIPLQQHLGPEGELRVR
CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEE
AGEQVLKGQPLTVGRGRTVPVHAPTSGMITAIAPHTTAHPSGLAELCVHITPDGEDRWRE
CCHHHHCCCCEEECCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHEEECCCCCHHHHHC
QQPWADYRQRDKMALLDRIHQAGIAGLGGAGFPTASKLQGGLNGIITLIINAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHEEEHHEEECCCCCCEEC
ADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVP
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEE
TKYPSGGAKQLTKILTGKEVPFGKHSSSIGVLMQNVGTVVAIKRAVIDDEPLIERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHC
GDALSSPGNFWARIGTPVLYLLKLAGFKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCI
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCEE
LAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAYVCPSNIPLVQYYRQEKAEIRALDQESARAAEAKARFEAKQARLAREKLARELRHKQ
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDADQQTVDAAVSRLTRQSDGSESVINIPAGQMPDNSAVIAAREARKAQARARQA
HEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHH
EKQQARSTEETTDVVDPRQAAVAAAIARVKAKKAAQVQHVTTDVAEAGSEAIAEDPRKAA
HHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
VAAAIARVKAKKAAQAQHVTTDVAEAGSEAMAEDPRKAAVAAAIARVKAKKAAQAQHVTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAEAGSEAIAEDPRKAAVAAAIARVKAKKAAQAINPD
HHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA