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The map label for this gene is rnfD [H]

Identifier: 153950517

GI number: 153950517

Start: 2201433

End: 2202488

Strand: Direct

Name: rnfD [H]

Synonym: YpsIP31758_1898

Alternate gene names: 153950517

Gene position: 2201433-2202488 (Clockwise)

Preceding gene: 153947990

Following gene: 153949778

Centisome position: 46.61

GC content: 50.85

Gene sequence:

>1056_bases
TTGCAGATTGCCAGTTCCCCTTTTACCCACAATCAACGCAGTACCCGTCGTATTATGCTGCTGGTTATTCTGGCCTGTAT
TCCGGGGATTATCGCCCAGACTTACTTCTTCGGTTATGGCAGCCTGATTCAAGTCATGCTGGCTATGATCACTGCACTGT
TGGCCGAAGGTGCCGTATTGCAGTTACGTAAACAACCCGTCATGGCGCGGTTACAAGATAACTCAGCCCTGCTGACTGCC
TTATTGTTGGGGATAAGCCTCCCCCCATTGGCCCCCTGGTGGATGATCGTGCTGGGCACGCTATTTGCTATTGTCATTGC
CAAACAACTCTATGGTGGCCTAGGGCAGAACCCGTTTAACCCGGCAATGGTCGGTTATGTTGTGCTCCTTATTTCATTTC
CGGTACAAATGACCAGTTGGCTGCCACCGCTACCGTTGCAAGGAACGTCGGTGGGATTCTATGACAGTCTCTTAACCATT
TTCACCGGTTATACCCACAGTGGTGAGAATATTCATCAGCTCCAAGTTGGCTATGACGGCATCAGCCAAGCGACGCCACT
GGATACGTTTAAGACCTCGCTACGTTCACAGCCAGCAGATCAAATTCTGCAACAGCCCATATTTGGCGGTGTGCTGGCGG
GTTTAGGCTGGCAATGGGTTAATCTCGGCTTTCTGGTTGGCGGTTTATTGCTACTGTGGCGTAAAGCTATTCACTGGCAT
ATTCCCGTGAGCTTCCTGCTCGCCTTAGGAGGTTGTGCCGCAGTGAGCTGGATGATTGCTCCACAAAGCTTTGCCTCACC
AATGCTACATTTGTTCTCCGGTGCCACCATGTTAGGTGCATTTTTCATTGCTACCGATCCTGTCAGTGCCTCTACAACAC
CCCGTGGCCGCCTGATATTTGGTGCCCTCATTGGTATTCTGGTGTGGCTAATCCGGGTATATGGCGGCTATCCGGATGGT
GTTGCTTTTGCCGTGTTGCTCGCCAATATTACAGTTCCGTTGATTGACCACTATACCCAACCTCGGGTCTATGGCCATAA
AAGCGGGCACAAATAA

Upstream 100 bases:

>100_bases
GCCCACGCGATCCCTACGTTTGAAAGCCCTGATAAGTATTCTGACATATGGTTGCAATTTCATGAAATTCAGGCCTGTAA
CACCGACCCAGAACAAAGGG

Downstream 100 bases:

>100_bases
GGAGCCGTTATGCTAAAAACAATGAGGCGTCACGGCATCACTCTGGCGCTGTTTGCTGCCGGTGCCACAGGGTTAACTGC
GGTTGTTAACTCACTGACTG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNLGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDG
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Sequences:

>Translated_351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNLGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDG
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK
>Mature_351_residues
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTA
LLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTI
FTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNLGFLVGGLLLLWRKAIHWH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDG
VAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=69.3409742120344, Blast_Score=501, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 38095; Mature: 38095

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFN
HHHHCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC
ISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNLGFLVGGLLLLWRKAIHWH
CCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH
GALIGILVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFN
HHHHCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMVGYVVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC
ISQATPLDTFKTSLRSQPADQILQQPIFGGVLAGLGWQWVNLGFLVGGLLLLWRKAIHWH
CCCCCCHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDPVSASTTPRGRLIF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHH
GALIGILVWLIRVYGGYPDGVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]