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The map label for this gene is pdxS [H]

Identifier: 152973864

GI number: 152973864

Start: 18669

End: 19556

Strand: Direct

Name: pdxS [H]

Synonym: Bcer98_0010

Alternate gene names: 152973864

Gene position: 18669-19556 (Clockwise)

Preceding gene: 152973863

Following gene: 152973865

Centisome position: 0.46

GC content: 42.57

Gene sequence:

>888_bases
ATGACAAATGTAACAGGAACAGAACGTGTCAAACGTGGAATGGCAGAAATGCAAAAAGGCGGCGTTATTATGGATGTAGT
TAACGCTGAACAAGCAAAGATTGCAGAAGAAGCAGGCGCAGTTGCCGTTATGGCGTTAGAGCGTGTTCCTGCAGATATTC
GTGCTGCAGGTGGCGTTGCACGTATGGCAGATCCAACAATTGTAGAAGAAGTTATGGGGGCTGTATCAATTCCAGTTATG
GCAAAATGCCGGATTGGTCATCTGGTGGAAGCTCGTGTATTAGAATCATTAGGGGTAGACTATATTGATGAGAGTGAAGT
GTTAACTCCAGCTGATGAAGTAAACCATTTAAATAAACGTGATTACACTGTTCCATTTGTATGTGGATGTCGTGATATTG
GAGAAGCTGCGCGTCGTATTGCAGAGGGGGCTTCTATGCTTCGAACAAAAGGTGAACCTGGAACGGGAAATATCGTAGAA
GCAGTTCGTCATATGCGTCAAGTCAATGCAGAAATCCGTCAAGTTGCGAATCTTCGTGAAGACGAACTTATGACATATGC
TAAAAATACTGGTGCTCCTTATGAAGTTTTACTTGAAATTAAACGTCTTGGGCGTCTTCCAGTTGTAAACTTTGCAGCAG
GAGGTGTAGCAACGCCAGCAGATGCGGCATTAATGATGCAGCTTGGTGCAGATGGTGTGTTCGTAGGTTCTGGTATTTTT
AAATCAGAAAACCCTGAAAAGTTTGCACGTGCAATTGTTGAAGCAACCACACATTATGAAGATTATGAGTTAATTGCAAA
TCTTTCTAAAGGATTAGGTGATGCAATGAAGGGCGTTGAAATTTCAACACTATTACCAGAACAACGTATGCAAGAACGCG
GTTGGTAA

Upstream 100 bases:

>100_bases
AGTAGTGGACAAGTCTCTAATAGTTAGTGATAGAATGTAAGAGTATTCTAAATTTTCGCCTTTAACGGGGGAAGCAATTC
ATCTAGGGAGGTTTTTGTAC

Downstream 100 bases:

>100_bases
TTAAAGGAGATTTAAAAATGGTAAAAATCGGTGTGTTAGGTCTTCAAGGAGCAGTTCGAGAGCATGTAAAAGCAATTGAA
GCAAGCGGTGCAGAAGCTGT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTNVTGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVM
AKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVE
AVRHMRQVNAEIRQVANLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
KSENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEISTLLPEQRMQERGW

Sequences:

>Translated_295_residues
MTNVTGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVM
AKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVE
AVRHMRQVNAEIRQVANLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
KSENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEISTLLPEQRMQERGW
>Mature_294_residues
TNVTGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVMA
KCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEA
VRHMRQVNAEIRQVANLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
SENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEISTLLPEQRMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=57.3883161512027, Blast_Score=346, Evalue=2e-96,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=59.5238095238095, Blast_Score=345, Evalue=5e-96,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=59.5238095238095, Blast_Score=345, Evalue=6e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31810; Mature: 31679

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNVTGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVA
CCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCH
RMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKR
HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC
DYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVANLRE
CCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC
KSENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEISTLLPEQRMQERGW
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCC
>Mature Secondary Structure 
TNVTGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVA
CCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCH
RMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKR
HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC
DYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVANLRE
CCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC
KSENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEISTLLPEQRMQERGW
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA