Click here to switch to the map view.

The map label for this gene is tfx

Identifier: 150401148

GI number: 150401148

Start: 739078

End: 739482

Strand: Direct

Name: tfx

Synonym: Maeo_0719

Alternate gene names: NA

Gene position: 739078-739482 (Clockwise)

Preceding gene: 150401147

Following gene: 150401149

Centisome position: 47.09

GC content: 29.14

Gene sequence:

>405_bases
ATGGATTCATTTCTAACGGAAACTCAAATAAAAGTATTAAAATTAAGAAAAAAAGGACTAACCCAGGAAAAAATTGCCGA
GCAACTTAATACCAGTAGGGCAAATATAAGTATGATAGAAAAACGAGCAAAGGAGAACATTGCAAAAGCCAAAGAAACAT
TGAAAATATATAATAATATCATAGCCCCATTAAAATTAATCATACCAGAAGGAACAGATGTTTTAGACATTCCAAAACAG
ATATTGGAAGTTTCGGATATAAATGATATTACTATACCTTATGCTCAATTGGAGATGCTTGAATTAATACATAAAAGTGT
GCCAGAATGCCTATATAATCGAGTAGTTAAAAAATCATTTACTATAAATATACTTGAAAATGGAGAATTGTCATTTATGG
GATAA

Upstream 100 bases:

>100_bases
TAAAAAAATAAAATAATTATAATAATTATAATAATAAGGAATACAATATTATAAAAATAGAATAAGATAGAATAAACCAA
TATAATAATAAAGGGATATT

Downstream 100 bases:

>100_bases
TATGAAAATAATTAAAGAAATACCTGAAAAAAATATAATTAAAGTTATGCCCGAAAACTTAGATGATTTATGGCACCTAT
CAAATATAATTTTAAAAAAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MDSFLTETQIKVLKLRKKGLTQEKIAEQLNTSRANISMIEKRAKENIAKAKETLKIYNNIIAPLKLIIPEGTDVLDIPKQ
ILEVSDINDITIPYAQLEMLELIHKSVPECLYNRVVKKSFTINILENGELSFMG

Sequences:

>Translated_134_residues
MDSFLTETQIKVLKLRKKGLTQEKIAEQLNTSRANISMIEKRAKENIAKAKETLKIYNNIIAPLKLIIPEGTDVLDIPKQ
ILEVSDINDITIPYAQLEMLELIHKSVPECLYNRVVKKSFTINILENGELSFMG
>Mature_134_residues
MDSFLTETQIKVLKLRKKGLTQEKIAEQLNTSRANISMIEKRAKENIAKAKETLKIYNNIIAPLKLIIPEGTDVLDIPKQ
ILEVSDINDITIPYAQLEMLELIHKSVPECLYNRVVKKSFTINILENGELSFMG

Specific function: Putative transcriptional regulator [H]

COG id: COG1356

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfx family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR007630
- InterPro:   IPR004645
- InterPro:   IPR018384 [H]

Pfam domain/function: PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 15255; Mature: 15255

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFLTETQIKVLKLRKKGLTQEKIAEQLNTSRANISMIEKRAKENIAKAKETLKIYNNI
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAPLKLIIPEGTDVLDIPKQILEVSDINDITIPYAQLEMLELIHKSVPECLYNRVVKKSF
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TINILENGELSFMG
EEEEEECCCEEECC
>Mature Secondary Structure
MDSFLTETQIKVLKLRKKGLTQEKIAEQLNTSRANISMIEKRAKENIAKAKETLKIYNNI
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAPLKLIIPEGTDVLDIPKQILEVSDINDITIPYAQLEMLELIHKSVPECLYNRVVKKSF
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TINILENGELSFMG
EEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]