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The map label for this gene is pelA

Identifier: 150399842

GI number: 150399842

Start: 1111657

End: 1112703

Strand: Reverse

Name: pelA

Synonym: Mevan_1097

Alternate gene names: 150399842

Gene position: 1112703-1111657 (Counterclockwise)

Preceding gene: 150399843

Following gene: 150399841

Centisome position: 64.69

GC content: 32.28

Gene sequence:

>1047_bases
ATGAAGATAATTCAAGAAATACCTGAAAAAAATATTATAAAAGTTATGCCTGAAAATCTGGATGATTTATGGCATTTATC
ACATATTGTTCAAGCCTATAATGCTGTTTATTCAGTAACTGAAAGGAGAACTGAGGATAAGGGTGACAAATTAAGGGCGG
ATAGGGGAACTAAAAGAAGGGTTTTTCTAGGAATAAAGGTAGAAAAAGTTAGTTTTCATGAAGAAGTAAATCGGCTTAGA
GTTAGTGGAAAAATAATTCATGCTCCAGAAGATATACCGATTGGTTCATACCATACGTTAGATATTGAACCATTTACTCA
AATTTCAATCCAGAAAAATTGGAAAAAATGGGATCTTACAAGATTAAAAGAAGCTGAAGAGTCAGGGAAACGTCCAAAGG
TAGTAGTTGTAATTTTAGATGATAGCGAAGCAGATATTTTTACAGTTCGTGATTTTGGAGTAAAGGAGCTTGCATCAATT
AAATCTGGAGTTTCAAAGCGAATCGACTCTAAACAAAACGAACAAGCTAAATATCTTTATTACAACGAAATAATAACCAC
ATTATCGGAATTTGATGGAAAAATACTATTTGCAGGACCTGGTTTTTCTAAAAATAATATTCAAAATTATATATCTGAAA
AACATAAGGATTTAGCTTCAAAAATTGTTATTGAATCCACAAACCATACTGGAAGACTTGGGCTCTCTGAAATATTAAAA
TCAGGAATTATAGACCGGATATATGGTGAAGCTAGACTTAGTAAGGAATCTCAAATCATTGAAAAACTGCTTGAGGAAAT
TTCAAAAAAAAGGCTTGCTTCATACGGGTTAAACAGTGTTAAAAATTCTATTAATTATTCTGCAGTTGAAACTCTTTTAA
TAACTGATGAATTTTTAAGAAGGAATAGAAGTACTGTTGAAGAAATGGTAAATTCAGTTGAAAACAGTGGCGGGAAATTT
GTTGTAATATCGACAGAGCACGATTCAGGAAGGCAATTAAAAGCACTCGGTGGAATTTCAGCACTACTGAGGTTTCCAGT
AGAATAA

Upstream 100 bases:

>100_bases
AAACCGAATGGTAGTAGAACCTTTTATTATTACAATACTTCAAAATGGGGAAATTTACGTCCACGATTTTGAGGAAGAAA
AGGCTAAAAATTGAGATAAA

Downstream 100 bases:

>100_bases
ATATATTTTATAGAATGTTGATAGTACTTAAAATTTTAAAATTCTTTTAAAATAAATTACATGGGTTTACCATGTAATAA
ATACACCTACATAATAAAGA

Product: putative translation factor pelota

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKIIQEIPEKNIIKVMPENLDDLWHLSHIVQAYNAVYSVTERRTEDKGDKLRADRGTKRRVFLGIKVEKVSFHEEVNRLR
VSGKIIHAPEDIPIGSYHTLDIEPFTQISIQKNWKKWDLTRLKEAEESGKRPKVVVVILDDSEADIFTVRDFGVKELASI
KSGVSKRIDSKQNEQAKYLYYNEIITTLSEFDGKILFAGPGFSKNNIQNYISEKHKDLASKIVIESTNHTGRLGLSEILK
SGIIDRIYGEARLSKESQIIEKLLEEISKKRLASYGLNSVKNSINYSAVETLLITDEFLRRNRSTVEEMVNSVENSGGKF
VVISTEHDSGRQLKALGGISALLRFPVE

Sequences:

>Translated_348_residues
MKIIQEIPEKNIIKVMPENLDDLWHLSHIVQAYNAVYSVTERRTEDKGDKLRADRGTKRRVFLGIKVEKVSFHEEVNRLR
VSGKIIHAPEDIPIGSYHTLDIEPFTQISIQKNWKKWDLTRLKEAEESGKRPKVVVVILDDSEADIFTVRDFGVKELASI
KSGVSKRIDSKQNEQAKYLYYNEIITTLSEFDGKILFAGPGFSKNNIQNYISEKHKDLASKIVIESTNHTGRLGLSEILK
SGIIDRIYGEARLSKESQIIEKLLEEISKKRLASYGLNSVKNSINYSAVETLLITDEFLRRNRSTVEEMVNSVENSGGKF
VVISTEHDSGRQLKALGGISALLRFPVE
>Mature_348_residues
MKIIQEIPEKNIIKVMPENLDDLWHLSHIVQAYNAVYSVTERRTEDKGDKLRADRGTKRRVFLGIKVEKVSFHEEVNRLR
VSGKIIHAPEDIPIGSYHTLDIEPFTQISIQKNWKKWDLTRLKEAEESGKRPKVVVVILDDSEADIFTVRDFGVKELASI
KSGVSKRIDSKQNEQAKYLYYNEIITTLSEFDGKILFAGPGFSKNNIQNYISEKHKDLASKIVIESTNHTGRLGLSEILK
SGIIDRIYGEARLSKESQIIEKLLEEISKKRLASYGLNSVKNSINYSAVETLLITDEFLRRNRSTVEEMVNSVENSGGKF
VVISTEHDSGRQLKALGGISALLRFPVE

Specific function: May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has end

COG id: COG1537

COG function: function code R; Predicted RNA-binding proteins

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic release factor 1 family. Pelota subfamily

Homologues:

Organism=Homo sapiens, GI31880783, Length=378, Percent_Identity=26.7195767195767, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17554648, Length=358, Percent_Identity=23.463687150838, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6324327, Length=365, Percent_Identity=26.8493150684932, Blast_Score=86, Evalue=6e-18,
Organism=Drosophila melanogaster, GI17136914, Length=375, Percent_Identity=25.0666666666667, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PELO_METVS (A6UR75)

Other databases:

- EMBL:   CP000742
- RefSeq:   YP_001323609.1
- STRING:   A6UR75
- GeneID:   5324593
- GenomeReviews:   CP000742_GR
- KEGG:   mvn:Mevan_1097
- eggNOG:   arNOG04486
- HOGENOM:   HBG646058
- OMA:   MKLVRKD
- ProtClustDB:   CLSK876101
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_01853
- InterPro:   IPR005140
- InterPro:   IPR005141
- InterPro:   IPR005142
- InterPro:   IPR004405
- PANTHER:   PTHR10853
- TIGRFAMs:   TIGR00111

Pfam domain/function: PF03463 eRF1_1; PF03464 eRF1_2; PF03465 eRF1_3

EC number: NA

Molecular weight: Translated: 39545; Mature: 39545

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIQEIPEKNIIKVMPENLDDLWHLSHIVQAYNAVYSVTERRTEDKGDKLRADRGTKRR
CCCHHHCCCCCEEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEE
VFLGIKVEKVSFHEEVNRLRVSGKIIHAPEDIPIGSYHTLDIEPFTQISIQKNWKKWDLT
EEEEEEEEHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCCEEEEEECCCCHHHHH
RLKEAEESGKRPKVVVVILDDSEADIFTVRDFGVKELASIKSGVSKRIDSKQNEQAKYLY
HHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
YNEIITTLSEFDGKILFAGPGFSKNNIQNYISEKHKDLASKIVIESTNHTGRLGLSEILK
HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHH
SGIIDRIYGEARLSKESQIIEKLLEEISKKRLASYGLNSVKNSINYSAVETLLITDEFLR
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHH
RNRSTVEEMVNSVENSGGKFVVISTEHDSGRQLKALGGISALLRFPVE
CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIIQEIPEKNIIKVMPENLDDLWHLSHIVQAYNAVYSVTERRTEDKGDKLRADRGTKRR
CCCHHHCCCCCEEHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEE
VFLGIKVEKVSFHEEVNRLRVSGKIIHAPEDIPIGSYHTLDIEPFTQISIQKNWKKWDLT
EEEEEEEEHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCCCEEEEEECCCCHHHHH
RLKEAEESGKRPKVVVVILDDSEADIFTVRDFGVKELASIKSGVSKRIDSKQNEQAKYLY
HHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH
YNEIITTLSEFDGKILFAGPGFSKNNIQNYISEKHKDLASKIVIESTNHTGRLGLSEILK
HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHH
SGIIDRIYGEARLSKESQIIEKLLEEISKKRLASYGLNSVKNSINYSAVETLLITDEFLR
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHH
RNRSTVEEMVNSVENSGGKFVVISTEHDSGRQLKALGGISALLRFPVE
CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA