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The map label for this gene is rtcB [C]

Identifier: 150399454

GI number: 150399454

Start: 752465

End: 753907

Strand: Reverse

Name: rtcB [C]

Synonym: Mevan_0703

Alternate gene names: 150399454

Gene position: 753907-752465 (Counterclockwise)

Preceding gene: 150399456

Following gene: 150399453

Centisome position: 43.83

GC content: 35.76

Gene sequence:

>1443_bases
TTGAAAGCAAATGTGAAAAAAATAGCTGAAAAAACGTACCAACTTTCAACTGATTATAAATCTGATATGAAAGTTCCAGG
AAATATTTATCTTGATGACATACTTTTTAAAAACCTTGAAGAAGACGTATTTGAACAGATTGCAAATGTTGCATGTTTAC
CCGGCATTCAAAAGTATTCCCTTGCAATGCCAGACTGTCACTACGGTTACGGGTTTTGTATCGGAGGGGTTGCAGCATTT
GATGAAAAAACAGGAGTAATAAGTCCAGGGGGCGTTGGTTTCGATATTAATTGTGGAGTAAGACTTTTAAAAACCAATTT
AACAAAAAAAGATGTAGATTCAAACTTGAAAGGGCTTTTACAGGAAATATTTAAAAATGTTCCTTCTGGACTTGGAAGTA
AGGGAAAAATAAAAATTACTAAAAATGAAATTGATAACGTACTTGAAGAAGGCGTTGACTGGGCATCAAGTGAGGGTTAC
GCTTGGAAAAATGATTACAGGCATATTGAAGAACACGGAAAAATGAAAAATGCAGACGCTTCATTAGTTTCAGATAATGC
AAAAAAAAGGGGACTTCCCCAGTTAGGGTCTTTAGGTAGTGGAAACCATTTTTTAGAGGTTCAGTATGTTGATGAAATAT
TTGATGAAAATGCAGCAAAAGCATACGGTGTTGAAAAAGATCAAGTCGTTTTAATGATACATACTGGTTCAAGAGGCTTG
GGCCACCAGATATGTGCGGATTATTTAAGATACATGGAAAGCGCATCAAAAAAATATAATATCAAGTTACCGGATAGACA
GCTTGCATGTGCACCGATAAGTTCTGAAGAAGGAATGCGTTATTTTAACGCAATGTCTGCGGGTGCAAATTATGCATGGG
TAAATAGACAGCTTGTCACAAACTGGATAAGGGAAAGTTTTGAACAAGTATTTAAAATGTCTGCAGAAGATTTAGAAATG
GATATAATCTATGACGTTGCACATAATATTGCTAAAAAAGAGCAGCATATAATTGATGGAAAAATGAAAAACGTTATAGT
TCATAGGAAAGGTGCAACAAGGGCATTTGGGCCAGGACATGATGAAATTCCATCAGAATATGTTAAAATAGGACAACCAG
TTATAATTCCAGGTGATATGGGCACTGCGTCTTATTTAATGCATGGGACTGAAAAAGCAATGAATGAAACCTTTGGATCA
ACTGCACATGGTGCGGGAAGAGCTTTAAGTCGAGTACAGGCTCTTAAATTATACAAAGGAAATGAAGTTCAAGAAAAGCT
TCAGAAAAAAGGAATATTGGTCTTAGCAGATTCTAAAGGGGTTATTGCAGAAGAATGTCCTGAGGCATACAAAGACATTG
AAACTGTTGCAAACGTATGCAATGATTCAGGAATATCTTTAAAAGTTGCTAAAATGAGGCCAATGGGTGTAGTAAAAGGA
TAA

Upstream 100 bases:

>100_bases
AGCATAAGTTTTTAATTAGCTAGGATTATTCTTTTATTTGAATATAAAATAATTTATTTTAACAGGTATTATTTTACGGG
TGAATTCTACGGGTGAGAAA

Downstream 100 bases:

>100_bases
TTTTATTAATATATAAAAGGAATATTTTACGTAAATTTAAGCTAAAATCGTATTGAAGGTGAAACAATGAAAATTAAAGT
AGGAATATTGGGGGCAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MKANVKKIAEKTYQLSTDYKSDMKVPGNIYLDDILFKNLEEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAF
DEKTGVISPGGVGFDINCGVRLLKTNLTKKDVDSNLKGLLQEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGY
AWKNDYRHIEEHGKMKNADASLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEKDQVVLMIHTGSRGL
GHQICADYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVTNWIRESFEQVFKMSAEDLEM
DIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGHDEIPSEYVKIGQPVIIPGDMGTASYLMHGTEKAMNETFGS
TAHGAGRALSRVQALKLYKGNEVQEKLQKKGILVLADSKGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG

Sequences:

>Translated_480_residues
MKANVKKIAEKTYQLSTDYKSDMKVPGNIYLDDILFKNLEEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAF
DEKTGVISPGGVGFDINCGVRLLKTNLTKKDVDSNLKGLLQEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGY
AWKNDYRHIEEHGKMKNADASLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEKDQVVLMIHTGSRGL
GHQICADYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVTNWIRESFEQVFKMSAEDLEM
DIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGHDEIPSEYVKIGQPVIIPGDMGTASYLMHGTEKAMNETFGS
TAHGAGRALSRVQALKLYKGNEVQEKLQKKGILVLADSKGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG
>Mature_480_residues
MKANVKKIAEKTYQLSTDYKSDMKVPGNIYLDDILFKNLEEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAF
DEKTGVISPGGVGFDINCGVRLLKTNLTKKDVDSNLKGLLQEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGY
AWKNDYRHIEEHGKMKNADASLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEKDQVVLMIHTGSRGL
GHQICADYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVTNWIRESFEQVFKMSAEDLEM
DIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGHDEIPSEYVKIGQPVIIPGDMGTASYLMHGTEKAMNETFGS
TAHGAGRALSRVQALKLYKGNEVQEKLQKKGILVLADSKGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=49.5951417004049, Blast_Score=494, Evalue=1e-140,
Organism=Escherichia coli, GI2367224, Length=447, Percent_Identity=31.0961968680089, Blast_Score=162, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=48.3805668016194, Blast_Score=485, Evalue=1e-137,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=48.9878542510121, Blast_Score=475, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52941; Mature: 52941

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANVKKIAEKTYQLSTDYKSDMKVPGNIYLDDILFKNLEEDVFEQIANVACLPGIQKYS
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAMPDCHYGYGFCIGGVAAFDEKTGVISPGGVGFDINCGVRLLKTNLTKKDVDSNLKGLL
CCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHH
QEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGYAWKNDYRHIEEHGKMKNADA
HHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
SLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEKDQVVLMIHTGSRGL
HHHCCCHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHCCCCCCCEEEEEECCCCCC
GHQICADYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVT
HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEHHHHHHHH
NWIRESFEQVFKMSAEDLEMDIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCC
DEIPSEYVKIGQPVIIPGDMGTASYLMHGTEKAMNETFGSTAHGAGRALSRVQALKLYKG
CCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
NEVQEKLQKKGILVLADSKGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG
CHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MKANVKKIAEKTYQLSTDYKSDMKVPGNIYLDDILFKNLEEDVFEQIANVACLPGIQKYS
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LAMPDCHYGYGFCIGGVAAFDEKTGVISPGGVGFDINCGVRLLKTNLTKKDVDSNLKGLL
CCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHH
QEIFKNVPSGLGSKGKIKITKNEIDNVLEEGVDWASSEGYAWKNDYRHIEEHGKMKNADA
HHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
SLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDENAAKAYGVEKDQVVLMIHTGSRGL
HHHCCCHHHCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHCCCCCCCEEEEEECCCCCC
GHQICADYLRYMESASKKYNIKLPDRQLACAPISSEEGMRYFNAMSAGANYAWVNRQLVT
HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEHHHHHHHH
NWIRESFEQVFKMSAEDLEMDIIYDVAHNIAKKEQHIIDGKMKNVIVHRKGATRAFGPGH
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCCC
DEIPSEYVKIGQPVIIPGDMGTASYLMHGTEKAMNETFGSTAHGAGRALSRVQALKLYKG
CCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
NEVQEKLQKKGILVLADSKGVIAEECPEAYKDIETVANVCNDSGISLKVAKMRPMGVVKG
CHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA