Definition Methanococcus vannielii SB chromosome, complete genome.
Accession NC_009634
Length 1,720,048

Click here to switch to the map view.

The map label for this gene is 150398983

Identifier: 150398983

GI number: 150398983

Start: 271367

End: 272347

Strand: Reverse

Name: 150398983

Synonym: Mevan_0229

Alternate gene names: NA

Gene position: 272347-271367 (Counterclockwise)

Preceding gene: 150398992

Following gene: 150398982

Centisome position: 15.83

GC content: 28.34

Gene sequence:

>981_bases
ATAAAACTAATTATCAACACCCCTGGAACATATATATCAAAATCAGGAACTCGCTTTAAATTAAAAAATGGCGAAAATGT
TCAGGAAATCCCTGCAAAAAAGGTAGAACAAATTTTAATTACTTGCCCTTCTTCCATATCTACTGAGGCAATATCCTTGG
CAGTTGAAGAAAATATTGATTTAGTACTCTTAAAAATGAATGGAAAACCCGTAGGTAGATTTTGGCATTCAAAGCACGGG
AGTATTTCCACAATTAGAAAAAAACAACTTTTGCTTTCTGAAAATGAACTTGGATTAACACTTGTAAAAGAATGGATTTC
TAAAAAAATAGAAAATCAGACTGATTTTTTAAAAATAATTGCTATGAACCGAAGAGATGAAAGAAGAGATTTGATTAATG
AAAGTATCCTAAAAATGGATGAAAGGAAAAATAAGTTAAATTCATTAACATTCGAACAAAATATTGATGAAATAAGAAAT
ACGATTCAAGGTTATGAGGGTTATTCAAGTAGACTATATTTTGAAATGATTTCAAAAAGTTTACCTGAAAAATATCAATT
TAACAAAAGAAGTAGAAATCCTGCAGAGGATTACTTTAACTGCATGTTAAACTACGGCTATGGAATACTTTATTCCCAAA
TTGAACGTTCATGTATAATTTCCGGACTTGACCCATATATCGGCATTTTGCATGTTGATAATTACAATAGAAAAGCGTTT
ACTTTTGATTTAATTGAAAAATATCGAATATATATTGACAAAATCATTTTTAAAATGTTTTCAACAAAAAAGATAAAAGA
TAACTTTTTTGAAGAAATTGAAGGGGGATTTTATTTAGCAAAAGATGGAAAACAAGCGTTAATTTCAGAATACAACCTAT
TAATTGAGAGTAAGGAAAAATATCGCGGAAAAAATATGGAAATTCAAAATATAATCCAATTAGAATGCCATAATATTGCA
AACAGGATTTTAAATGGGTGA

Upstream 100 bases:

>100_bases
TGTTTGAAATAATATCTATCATACTGAACCCCCGTATAAACAAGATATATTATTTAGTTTTAACAATATAATATTATCGG
TTTTAATTGGAGGGGATACT

Downstream 100 bases:

>100_bases
TCATATGCTTTTATGGGTAATTTACGATATTTCAGATGATAAAATAAGAAGCAAAGTTTCAAAGACATGTTTAAACTATG
GATTATACCGCGTTCAAAAA

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: CRISPR-Associated Protein; CRISPR-Associated Cas1/Cas4 Family Protein; CRISPR-Associated Protein Cas1 Family; CRISPR-Associated ; CRISPR-Associated HMARI/TNEAP Subtype; Cytoplasmic Protein; Protein Be Involved In DNA Repair; Crispr-Associated A; CRISPR-Associated DNA Polymerase; DNA Polymerase; Cas1 Family CRISPR-Associated Protein

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKLIINTPGTYISKSGTRFKLKNGENVQEIPAKKVEQILITCPSSISTEAISLAVEENIDLVLLKMNGKPVGRFWHSKHG
SISTIRKKQLLLSENELGLTLVKEWISKKIENQTDFLKIIAMNRRDERRDLINESILKMDERKNKLNSLTFEQNIDEIRN
TIQGYEGYSSRLYFEMISKSLPEKYQFNKRSRNPAEDYFNCMLNYGYGILYSQIERSCIISGLDPYIGILHVDNYNRKAF
TFDLIEKYRIYIDKIIFKMFSTKKIKDNFFEEIEGGFYLAKDGKQALISEYNLLIESKEKYRGKNMEIQNIIQLECHNIA
NRILNG

Sequences:

>Translated_326_residues
MKLIINTPGTYISKSGTRFKLKNGENVQEIPAKKVEQILITCPSSISTEAISLAVEENIDLVLLKMNGKPVGRFWHSKHG
SISTIRKKQLLLSENELGLTLVKEWISKKIENQTDFLKIIAMNRRDERRDLINESILKMDERKNKLNSLTFEQNIDEIRN
TIQGYEGYSSRLYFEMISKSLPEKYQFNKRSRNPAEDYFNCMLNYGYGILYSQIERSCIISGLDPYIGILHVDNYNRKAF
TFDLIEKYRIYIDKIIFKMFSTKKIKDNFFEEIEGGFYLAKDGKQALISEYNLLIESKEKYRGKNMEIQNIIQLECHNIA
NRILNG
>Mature_326_residues
MKLIINTPGTYISKSGTRFKLKNGENVQEIPAKKVEQILITCPSSISTEAISLAVEENIDLVLLKMNGKPVGRFWHSKHG
SISTIRKKQLLLSENELGLTLVKEWISKKIENQTDFLKIIAMNRRDERRDLINESILKMDERKNKLNSLTFEQNIDEIRN
TIQGYEGYSSRLYFEMISKSLPEKYQFNKRSRNPAEDYFNCMLNYGYGILYSQIERSCIISGLDPYIGILHVDNYNRKAF
TFDLIEKYRIYIDKIIFKMFSTKKIKDNFFEEIEGGFYLAKDGKQALISEYNLLIESKEKYRGKNMEIQNIIQLECHNIA
NRILNG

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38066; Mature: 38066

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIINTPGTYISKSGTRFKLKNGENVQEIPAKKVEQILITCPSSISTEAISLAVEENID
CEEEEECCCCEEECCCCEEEECCCCCHHHCCHHHHHHHHHCCCCCCCCHHEEEEEECCCC
LVLLKMNGKPVGRFWHSKHGSISTIRKKQLLLSENELGLTLVKEWISKKIENQTDFLKII
EEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHEEEE
AMNRRDERRDLINESILKMDERKNKLNSLTFEQNIDEIRNTIQGYEGYSSRLYFEMISKS
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LPEKYQFNKRSRNPAEDYFNCMLNYGYGILYSQIERSCIISGLDPYIGILHVDNYNRKAF
CCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
TFDLIEKYRIYIDKIIFKMFSTKKIKDNFFEEIEGGFYLAKDGKQALISEYNLLIESKEK
EHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHEECHHH
YRGKNMEIQNIIQLECHNIANRILNG
HCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLIINTPGTYISKSGTRFKLKNGENVQEIPAKKVEQILITCPSSISTEAISLAVEENID
CEEEEECCCCEEECCCCEEEECCCCCHHHCCHHHHHHHHHCCCCCCCCHHEEEEEECCCC
LVLLKMNGKPVGRFWHSKHGSISTIRKKQLLLSENELGLTLVKEWISKKIENQTDFLKII
EEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHEEEE
AMNRRDERRDLINESILKMDERKNKLNSLTFEQNIDEIRNTIQGYEGYSSRLYFEMISKS
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LPEKYQFNKRSRNPAEDYFNCMLNYGYGILYSQIERSCIISGLDPYIGILHVDNYNRKAF
CCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEE
TFDLIEKYRIYIDKIIFKMFSTKKIKDNFFEEIEGGFYLAKDGKQALISEYNLLIESKEK
EHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHEECHHH
YRGKNMEIQNIIQLECHNIANRILNG
HCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA