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The map label for this gene is asnC [C]

Identifier: 150398736

GI number: 150398736

Start: 3758839

End: 3759276

Strand: Direct

Name: asnC [C]

Synonym: Smed_3553

Alternate gene names: 150398736

Gene position: 3758839-3759276 (Clockwise)

Preceding gene: 150398734

Following gene: 150398738

Centisome position: 99.39

GC content: 60.96

Gene sequence:

>438_bases
ATGCTGGACGAGCTTGACCGACGCATTCTCGAAATTCTGGCCGGCAATTCCCGGGTGTCGCTGAAGGAACTGGCGCAGGA
GGCGGGCCTGTCCTCGCCGAGCGCGGCGGAGCGGTTGCGCAAGCTGGAGGAGCGCGGCGTGCTCGATGGCTTTACGATCT
CGGTCAATCCGGCTCGTCTCGGCTACCCGCTGCAGGCGATCGTTCGCATCCGGCCCATGCCCGGAATGCTGCATATCGTC
GAGCGGCTGATCCAGGAAACGCCCGAATTCATCGAATGCGACAAGGTTACTGGAGACGACTGTTTCATCGCCAAGATGCT
GGTGCGCGATATGGCGGAACTCGACACGATTCTCGATCGCATCGCGGAAAAGGCACAGACGAATACGTCGATCGTCAAAT
CGTCGCCGGTCAAGCGGCGCTTGCCGCCCCTTAACTGA

Upstream 100 bases:

>100_bases
AATGAGCCTGTTCGCGTGGATATATGGATATTTGTAGGAAGACATGGGAGTATGGCTGAATGTGAAAGGTGAAAAGGCCG
AAATGGCTTATGGAGATTTT

Downstream 100 bases:

>100_bases
GGCCCGTCGAGCCGAAGCCGCCGCCGCCGCGCGCGGTTGTGGACGCGCCGTCTGCCTCGCGGATCGCCATTTGGGTGACC
GGGGCGATCACCATCTGGGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLDELDRRILEILAGNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARLGYPLQAIVRIRPMPGMLHIV
ERLIQETPEFIECDKVTGDDCFIAKMLVRDMAELDTILDRIAEKAQTNTSIVKSSPVKRRLPPLN

Sequences:

>Translated_145_residues
MLDELDRRILEILAGNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARLGYPLQAIVRIRPMPGMLHIV
ERLIQETPEFIECDKVTGDDCFIAKMLVRDMAELDTILDRIAEKAQTNTSIVKSSPVKRRLPPLN
>Mature_145_residues
MLDELDRRILEILAGNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARLGYPLQAIVRIRPMPGMLHIV
ERLIQETPEFIECDKVTGDDCFIAKMLVRDMAELDTILDRIAEKAQTNTSIVKSSPVKRRLPPLN

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=152, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787116, Length=120, Percent_Identity=35, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16235; Mature: 16235

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDELDRRILEILAGNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARL
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECHHHH
GYPLQAIVRIRPMPGMLHIVERLIQETPEFIECDKVTGDDCFIAKMLVRDMAELDTILDR
CCHHHHHHHHCCCCCHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAEKAQTNTSIVKSSPVKRRLPPLN
HHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MLDELDRRILEILAGNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARL
CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECHHHH
GYPLQAIVRIRPMPGMLHIVERLIQETPEFIECDKVTGDDCFIAKMLVRDMAELDTILDR
CCHHHHHHHHCCCCCHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAEKAQTNTSIVKSSPVKRRLPPLN
HHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA