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The map label for this gene is ddpC [H]

Identifier: 150398495

GI number: 150398495

Start: 3495875

End: 3496720

Strand: Reverse

Name: ddpC [H]

Synonym: Smed_3305

Alternate gene names: 150398495

Gene position: 3496720-3495875 (Counterclockwise)

Preceding gene: 150398496

Following gene: 150398494

Centisome position: 92.46

GC content: 62.88

Gene sequence:

>846_bases
GTGAGACGTCTTATTGCTCAATTGGCGCATGATTGGGAATTGCTGCTCGGCGTGGTGCTTTTCGGCCTGATCGTCCTTCT
GGCAGTGTTCGGGGGTTGGCTCTGGCGGGAAGATCCGCTGCGCGTCGATATCCTCAACTCGCTGCTGCCGCCCGATCTCG
CACATCCCATGGGAACCGACGATGTCGGCCGCGATGTGCTGGCCCGCTTCATTCGCGGCGCGCAGGTGTCGATGGGCGTG
GCGATCAGCGTCACCATTGCCGGCACCCTGATCGGCGGCACATTGGGCCTGCTGGCGGGTCTCATCGGCGGCTGGTTCGA
TGTCGTGGTCTCGCGGATCATGGATGCGATCCTCGCCTTTCCGCCGCTCATTCTGGCCATGGCGGTGGCTATTGGTCTCG
GACAGGGCATCGTCTCGGCCGGCATCGGCGTGATTCTGGCCGCCATTCCCTGGTACTTCCGCCTGCTGCGCAGCGAGGTC
CTGCGCCTCAGGACGCTGATGTATGTGGAATCCGCACAGGCGCTCGGCGCCTCGAGTTTTCGGCTGATCCGCCTGCATAT
TCTGCCTCAGACCACGTCGACCATCTTCATTCAGGCCTCTTCGGTCTTCGGTTTCTCAATCCTCACCCTTGCCGCCCTGG
GTTTTGTCGGGCTCGGCATCCAGCCGCCGACGCCCGAATGGGGCACGATGATCACCGAGGGGCTCGCCTACGCGCTCACG
GGTCAATGGTGGCTGGGCTTCTTTCCCGGTCTCGGCATCTTCATCCTCGCCGTCTCGGCCAATCTGATCGCCGACCGGCT
GCGCGATATCTATGACCCGAAATCCGGCGCACGGCTGTCAATCTAG

Upstream 100 bases:

>100_bases
GACCCGACCCCCGCCCCGGATCTGAGAGACCGCCATCATGGGAACGCGCGGCCCGACCGTGCGCTCCAACCCTTTTCCAC
CAAGATAAGAGGCCAGGCTG

Downstream 100 bases:

>100_bases
GAGCAAGAGATGATCGACTTTCTGCTTGCACGTATCGGATCGGCCATCGTCACCATTTTCGGCGCCTCGGTTCTGGCCTT
TGCCGTGCTGCGCGCCGTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRRLIAQLAHDWELLLGVVLFGLIVLLAVFGGWLWREDPLRVDILNSLLPPDLAHPMGTDDVGRDVLARFIRGAQVSMGV
AISVTIAGTLIGGTLGLLAGLIGGWFDVVVSRIMDAILAFPPLILAMAVAIGLGQGIVSAGIGVILAAIPWYFRLLRSEV
LRLRTLMYVESAQALGASSFRLIRLHILPQTTSTIFIQASSVFGFSILTLAALGFVGLGIQPPTPEWGTMITEGLAYALT
GQWWLGFFPGLGIFILAVSANLIADRLRDIYDPKSGARLSI

Sequences:

>Translated_281_residues
MRRLIAQLAHDWELLLGVVLFGLIVLLAVFGGWLWREDPLRVDILNSLLPPDLAHPMGTDDVGRDVLARFIRGAQVSMGV
AISVTIAGTLIGGTLGLLAGLIGGWFDVVVSRIMDAILAFPPLILAMAVAIGLGQGIVSAGIGVILAAIPWYFRLLRSEV
LRLRTLMYVESAQALGASSFRLIRLHILPQTTSTIFIQASSVFGFSILTLAALGFVGLGIQPPTPEWGTMITEGLAYALT
GQWWLGFFPGLGIFILAVSANLIADRLRDIYDPKSGARLSI
>Mature_281_residues
MRRLIAQLAHDWELLLGVVLFGLIVLLAVFGGWLWREDPLRVDILNSLLPPDLAHPMGTDDVGRDVLARFIRGAQVSMGV
AISVTIAGTLIGGTLGLLAGLIGGWFDVVVSRIMDAILAFPPLILAMAVAIGLGQGIVSAGIGVILAAIPWYFRLLRSEV
LRLRTLMYVESAQALGASSFRLIRLHILPQTTSTIFIQASSVFGFSILTLAALGFVGLGIQPPTPEWGTMITEGLAYALT
GQWWLGFFPGLGIFILAVSANLIADRLRDIYDPKSGARLSI

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=262, Percent_Identity=41.9847328244275, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787054, Length=255, Percent_Identity=40.3921568627451, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=39.2996108949416, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=34.297520661157, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787549, Length=271, Percent_Identity=33.210332103321, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787498, Length=229, Percent_Identity=31.0043668122271, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788505, Length=232, Percent_Identity=28.448275862069, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30169; Mature: 30169

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLIAQLAHDWELLLGVVLFGLIVLLAVFGGWLWREDPLRVDILNSLLPPDLAHPMGTD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHCCCCCCCCCCCCC
DVGRDVLARFIRGAQVSMGVAISVTIAGTLIGGTLGLLAGLIGGWFDVVVSRIMDAILAF
CCCHHHHHHHHCCCHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PPLILAMAVAIGLGQGIVSAGIGVILAAIPWYFRLLRSEVLRLRTLMYVESAQALGASSF
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RLIRLHILPQTTSTIFIQASSVFGFSILTLAALGFVGLGIQPPTPEWGTMITEGLAYALT
EEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GQWWLGFFPGLGIFILAVSANLIADRLRDIYDPKSGARLSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRRLIAQLAHDWELLLGVVLFGLIVLLAVFGGWLWREDPLRVDILNSLLPPDLAHPMGTD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHCCCCCCCCCCCCC
DVGRDVLARFIRGAQVSMGVAISVTIAGTLIGGTLGLLAGLIGGWFDVVVSRIMDAILAF
CCCHHHHHHHHCCCHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PPLILAMAVAIGLGQGIVSAGIGVILAAIPWYFRLLRSEVLRLRTLMYVESAQALGASSF
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RLIRLHILPQTTSTIFIQASSVFGFSILTLAALGFVGLGIQPPTPEWGTMITEGLAYALT
EEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GQWWLGFFPGLGIFILAVSANLIADRLRDIYDPKSGARLSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]