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The map label for this gene is dppB [H]

Identifier: 150398494

GI number: 150398494

Start: 3494864

End: 3495865

Strand: Reverse

Name: dppB [H]

Synonym: Smed_3304

Alternate gene names: 150398494

Gene position: 3495865-3494864 (Counterclockwise)

Preceding gene: 150398495

Following gene: 150398493

Centisome position: 92.44

GC content: 60.98

Gene sequence:

>1002_bases
ATGATCGACTTTCTGCTTGCACGTATCGGATCGGCCATCGTCACCATTTTCGGCGCCTCGGTTCTGGCCTTTGCCGTGCT
GCGCGCCGTGCCCACCAATCCCGCCCGCCTCATCGCCGGCCCCTTCGCCAATGACGAAGTGATCGCGCAGGTGACCGCCA
ATCTCGGGCTGGATAAATCGCTGCCCGTGCAATATCTGGACTATGTCACCTCCTTCTTTATCGGCGACTGGGGCTTTTCC
TATAGTGCCGGGCAGCCGGTTCTGTCGCAGATCACCGAACGGCTGCCGGCGAGCGCCGAACTTGCGCTTTACGCGTTCCT
GTTTGCCTTTTTCGGTGCTGTGCTGGTGACGGTGCTGGTCAGTTTTCTCAATTCGCGCTGGCTCGACCGCTTCCTGCGGC
TATTGTCCTTCATCAGCGTCGGCGTGCCGCCTTTCTGGCTGGCGCTATTGTTCCTGATGGTGTTTTTCGAACGGCTTGGC
TGGTTTCCCGGTCCTGTCGGCCGCGGCCCGGCACCCACCGGACTCTATACCGGCCTGTTCACCATCGACTATCTGCTGGC
GGGTGATTTCGCGGGCTTCGGTACGGCGCTGCATCATCTGGCGCTGCCGTCGATCGCACTGGCGCTTGGGCCGTTCGGCT
ATCTCGTGCGGCTGTTGCGTGCCAATCTGCTCGACATCATCAACGAGCCCTTCGTGACGGTTCTGCATGCCAAGGGCGTG
GCGCCGATCTCGACGCATTTCCGGCACATCCTGCCCAATGCCTTCCTGCCGACATTGACCGCCGGCGGCTTGATCCTGGC
GCAATTATTGGGCGGCAGCGTGCTGGTGGAGCGCATCTTCGTCTGGCCGGGCATCGGCACGCTGGTGATCGACGGCATTC
TCCGGCAGGATTATGCCGTGGTCCAGGCCTTCATCATGCTCAGCGCCATCATCTATATCGGCGTCAATCTGCTGGTCGAC
ATTCTCTACGGCTATGTCGATCCGCGTGTCCGGAGGAGTTGA

Upstream 100 bases:

>100_bases
CATCTTCATCCTCGCCGTCTCGGCCAATCTGATCGCCGACCGGCTGCGCGATATCTATGACCCGAAATCCGGCGCACGGC
TGTCAATCTAGGAGCAAGAG

Downstream 100 bases:

>100_bases
GGCCATGACGGAACCTCCTATGTCCATCCCGCTTTTGGAAGTGACCGGTCTCAAAACCTCATTCACGACCCCGCGCGGAA
CAGTAAAAAGCGTCGATGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MIDFLLARIGSAIVTIFGASVLAFAVLRAVPTNPARLIAGPFANDEVIAQVTANLGLDKSLPVQYLDYVTSFFIGDWGFS
YSAGQPVLSQITERLPASAELALYAFLFAFFGAVLVTVLVSFLNSRWLDRFLRLLSFISVGVPPFWLALLFLMVFFERLG
WFPGPVGRGPAPTGLYTGLFTIDYLLAGDFAGFGTALHHLALPSIALALGPFGYLVRLLRANLLDIINEPFVTVLHAKGV
APISTHFRHILPNAFLPTLTAGGLILAQLLGGSVLVERIFVWPGIGTLVIDGILRQDYAVVQAFIMLSAIIYIGVNLLVD
ILYGYVDPRVRRS

Sequences:

>Translated_333_residues
MIDFLLARIGSAIVTIFGASVLAFAVLRAVPTNPARLIAGPFANDEVIAQVTANLGLDKSLPVQYLDYVTSFFIGDWGFS
YSAGQPVLSQITERLPASAELALYAFLFAFFGAVLVTVLVSFLNSRWLDRFLRLLSFISVGVPPFWLALLFLMVFFERLG
WFPGPVGRGPAPTGLYTGLFTIDYLLAGDFAGFGTALHHLALPSIALALGPFGYLVRLLRANLLDIINEPFVTVLHAKGV
APISTHFRHILPNAFLPTLTAGGLILAQLLGGSVLVERIFVWPGIGTLVIDGILRQDYAVVQAFIMLSAIIYIGVNLLVD
ILYGYVDPRVRRS
>Mature_333_residues
MIDFLLARIGSAIVTIFGASVLAFAVLRAVPTNPARLIAGPFANDEVIAQVTANLGLDKSLPVQYLDYVTSFFIGDWGFS
YSAGQPVLSQITERLPASAELALYAFLFAFFGAVLVTVLVSFLNSRWLDRFLRLLSFISVGVPPFWLALLFLMVFFERLG
WFPGPVGRGPAPTGLYTGLFTIDYLLAGDFAGFGTALHHLALPSIALALGPFGYLVRLLRANLLDIINEPFVTVLHAKGV
APISTHFRHILPNAFLPTLTAGGLILAQLLGGSVLVERIFVWPGIGTLVIDGILRQDYAVVQAFIMLSAIIYIGVNLLVD
ILYGYVDPRVRRS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=35.2941176470588, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787053, Length=331, Percent_Identity=32.3262839879154, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=32.4404761904762, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=35.3474320241692, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787550, Length=263, Percent_Identity=30.0380228136882, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787497, Length=338, Percent_Identity=28.698224852071, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788504, Length=294, Percent_Identity=26.530612244898, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36201; Mature: 36201

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFLLARIGSAIVTIFGASVLAFAVLRAVPTNPARLIAGPFANDEVIAQVTANLGLDKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHCCCCCC
LPVQYLDYVTSFFIGDWGFSYSAGQPVLSQITERLPASAELALYAFLFAFFGAVLVTVLV
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SFLNSRWLDRFLRLLSFISVGVPPFWLALLFLMVFFERLGWFPGPVGRGPAPTGLYTGLF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
TIDYLLAGDFAGFGTALHHLALPSIALALGPFGYLVRLLRANLLDIINEPFVTVLHAKGV
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
APISTHFRHILPNAFLPTLTAGGLILAQLLGGSVLVERIFVWPGIGTLVIDGILRQDYAV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VQAFIMLSAIIYIGVNLLVDILYGYVDPRVRRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MIDFLLARIGSAIVTIFGASVLAFAVLRAVPTNPARLIAGPFANDEVIAQVTANLGLDKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHCCCCCC
LPVQYLDYVTSFFIGDWGFSYSAGQPVLSQITERLPASAELALYAFLFAFFGAVLVTVLV
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SFLNSRWLDRFLRLLSFISVGVPPFWLALLFLMVFFERLGWFPGPVGRGPAPTGLYTGLF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
TIDYLLAGDFAGFGTALHHLALPSIALALGPFGYLVRLLRANLLDIINEPFVTVLHAKGV
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
APISTHFRHILPNAFLPTLTAGGLILAQLLGGSVLVERIFVWPGIGTLVIDGILRQDYAV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VQAFIMLSAIIYIGVNLLVDILYGYVDPRVRRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]