| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is budC [H]
Identifier: 150398326
GI number: 150398326
Start: 3281541
End: 3282326
Strand: Direct
Name: budC [H]
Synonym: Smed_3132
Alternate gene names: 150398326
Gene position: 3281541-3282326 (Clockwise)
Preceding gene: 150398325
Following gene: 150398330
Centisome position: 86.77
GC content: 62.34
Gene sequence:
>786_bases ATGAGACGTTTCGCAGGCCAGACGGTTTTCGTCACCGGCGGCAACAAGGGAATCGGGCGCGGCATCGCCAAGCGCTTTGC CGAAGAGGGAGCGAAGGTCGCCATCGCGGCGATCGAGAAGGACATGTCCGCGGCCGCCGCGACGCTGACTGAAGAGACCG GCACCGATGTCATCGGACTGACGCTGGATGTAACCGACATTCAAGCGGTACAGGAAGCCTTTACGGAGGCCGAGGCGAAG CTGGGCGCGATCTCCGTATCCGTCCAGAACGCGGGTGTCATCACCATCGCCAAGGTCGAAGACCTCACCGAGCGCGAGTG GGACCTCAACCTGGATGTGAACACCAAGGGCGTCTTCCTCTGCTGCCAAGAAGCCGTTCGCCGCTTTCGCGCCAGCGGTA TCAAGGGCCGCCTCATCAATACCGCCTCCGGCCAGGCGCGCCAAGGCTTCATCTATACCCCGCATTATGCCGCCTCGAAG TTTGGCGTGGTCGGCCTCACCCAGAGCCTTGCCAAGGAACTCGCGCGGGAAGGAATCACCGCCAACGCAATTTGCCCCGG TATCATCCACACCGAGATGTGGGATTACAATGACCGCGTCTGGGGCCAGATGCTCGGTGAATACGCCCCCGGCGAACTGA TGGCCGAATGGGTTCGCGGTATCCCGATGGGCCGCGCCGGAACGCCGGCCGAAGTCGCGGCGCTGGTCGCCTTCCTGGCT TCAGAGGATGCGGCTTACATTACCGGGCAGACGATCAATGTCGATGGCGGCTTGATCATGTCGTGA
Upstream 100 bases:
>100_bases CGTTATCGATGTGCTCGTCACCGACAAGTTCACAGCAGCTCGGCTCACGGCCTGATCTGAAGATCGGTCCTGGCCCGTTG CGCATTATGGAGGAAAGACC
Downstream 100 bases:
>100_bases CGTTCGGCTCCCGTTCCGGCGAAATGTGAGCGCGCGTAATCCGGCGCGCGCGACTGCTCTTCGGAAAGGGCGAACCGCTC CTGTTACTCCGCCGCCGCCT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: Acetoin(diacetyl) reductase; AR; Meso-2,3-butanediol dehydrogenase [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MRRFAGQTVFVTGGNKGIGRGIAKRFAEEGAKVAIAAIEKDMSAAAATLTEETGTDVIGLTLDVTDIQAVQEAFTEAEAK LGAISVSVQNAGVITIAKVEDLTEREWDLNLDVNTKGVFLCCQEAVRRFRASGIKGRLINTASGQARQGFIYTPHYAASK FGVVGLTQSLAKELAREGITANAICPGIIHTEMWDYNDRVWGQMLGEYAPGELMAEWVRGIPMGRAGTPAEVAALVAFLA SEDAAYITGQTINVDGGLIMS
Sequences:
>Translated_261_residues MRRFAGQTVFVTGGNKGIGRGIAKRFAEEGAKVAIAAIEKDMSAAAATLTEETGTDVIGLTLDVTDIQAVQEAFTEAEAK LGAISVSVQNAGVITIAKVEDLTEREWDLNLDVNTKGVFLCCQEAVRRFRASGIKGRLINTASGQARQGFIYTPHYAASK FGVVGLTQSLAKELAREGITANAICPGIIHTEMWDYNDRVWGQMLGEYAPGELMAEWVRGIPMGRAGTPAEVAALVAFLA SEDAAYITGQTINVDGGLIMS >Mature_261_residues MRRFAGQTVFVTGGNKGIGRGIAKRFAEEGAKVAIAAIEKDMSAAAATLTEETGTDVIGLTLDVTDIQAVQEAFTEAEAK LGAISVSVQNAGVITIAKVEDLTEREWDLNLDVNTKGVFLCCQEAVRRFRASGIKGRLINTASGQARQGFIYTPHYAASK FGVVGLTQSLAKELAREGITANAICPGIIHTEMWDYNDRVWGQMLGEYAPGELMAEWVRGIPMGRAGTPAEVAALVAFLA SEDAAYITGQTINVDGGLIMS
Specific function: Catalyzes the reversible reduction of (S)-acetoin to 2,3-butanediol in the presence of NADH [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=268, Percent_Identity=35.8208955223881, Blast_Score=142, Evalue=4e-34, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=33.0739299610895, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=33.7254901960784, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=33.203125, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=28.957528957529, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=31.2977099236641, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=29.0697674418605, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4758504, Length=270, Percent_Identity=29.2592592592593, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=26.2745098039216, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI40254986, Length=203, Percent_Identity=30.0492610837438, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=28.740157480315, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=30, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI83715985, Length=271, Percent_Identity=27.6752767527675, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI310128830, Length=209, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI310115468, Length=209, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=30.7291666666667, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=23.8341968911917, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI209862901, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI19923983, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=23.3183856502242, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI186928839, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI166795268, Length=208, Percent_Identity=28.3653846153846, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI193804850, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI225579078, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=34.6303501945525, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=33.8461538461538, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=35.5731225296443, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=32.319391634981, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI2367175, Length=258, Percent_Identity=35.6589147286822, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=32.295719844358, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=30.6201550387597, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=30.8880308880309, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=28.6274509803922, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=30.9160305343511, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI2367365, Length=257, Percent_Identity=31.5175097276265, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=26.171875, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=33.976833976834, Blast_Score=128, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=34.2307692307692, Blast_Score=116, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17561402, Length=265, Percent_Identity=34.3396226415094, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=33.4615384615385, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=31.2, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17563726, Length=274, Percent_Identity=30.6569343065693, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17562910, Length=275, Percent_Identity=30.5454545454545, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17544670, Length=279, Percent_Identity=27.5985663082437, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560150, Length=284, Percent_Identity=30.9859154929577, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17559104, Length=288, Percent_Identity=30.9027777777778, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=29.296875, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562904, Length=281, Percent_Identity=30.2491103202847, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17561272, Length=242, Percent_Identity=32.6446280991736, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17562906, Length=281, Percent_Identity=29.1814946619217, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17538182, Length=271, Percent_Identity=30.2583025830258, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=286, Percent_Identity=30.0699300699301, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=29.520295202952, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI193204405, Length=279, Percent_Identity=28.3154121863799, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=28.6245353159851, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=27.4436090225564, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193203117, Length=210, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203115, Length=207, Percent_Identity=27.0531400966184, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=28.6821705426357, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=28.2051282051282, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=283, Percent_Identity=29.3286219081272, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17558628, Length=193, Percent_Identity=30.0518134715026, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=275, Percent_Identity=28.7272727272727, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=27.6923076923077, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17531453, Length=280, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=29.4573643410853, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=26.2773722627737, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=25.830258302583, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=27.8947368421053, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=27.4074074074074, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=24.2268041237113, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=26.7015706806283, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115534660, Length=211, Percent_Identity=27.4881516587678, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=26.5384615384615, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=30.5263157894737, Blast_Score=76, Evalue=7e-15, Organism=Drosophila melanogaster, GI21355319, Length=260, Percent_Identity=35.3846153846154, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=33.4630350194552, Blast_Score=129, Evalue=1e-30, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=32.156862745098, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=29.8449612403101, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=30.2325581395349, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=29.0076335877863, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=30.7984790874525, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=30.1507537688442, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=28.6821705426357, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=31.6062176165803, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24644337, Length=257, Percent_Identity=28.4046692607004, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=31.5270935960591, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI116007234, Length=245, Percent_Identity=28.9795918367347, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007236, Length=212, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364494, Length=228, Percent_Identity=25.8771929824561, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI19921754, Length=217, Percent_Identity=26.2672811059908, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI22024069, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331218, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665243, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=28.2926829268293, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648693, Length=217, Percent_Identity=28.110599078341, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355889, Length=217, Percent_Identity=28.110599078341, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331216, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28573296, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24665247, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24581726, Length=198, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014007 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.304 [H]
Molecular weight: Translated: 27733; Mature: 27733
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFAGQTVFVTGGNKGIGRGIAKRFAEEGAKVAIAAIEKDMSAAAATLTEETGTDVIGL CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE TLDVTDIQAVQEAFTEAEAKLGAISVSVQNAGVITIAKVEDLTEREWDLNLDVNTKGVFL EEEHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCHHHH CCQEAVRRFRASGIKGRLINTASGQARQGFIYTPHYAASKFGVVGLTQSLAKELAREGIT HHHHHHHHHHHCCCCCEEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC ANAICPGIIHTEMWDYNDRVWGQMLGEYAPGELMAEWVRGIPMGRAGTPAEVAALVAFLA CCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH SEDAAYITGQTINVDGGLIMS CCCCEEEECCEEECCCCEEEC >Mature Secondary Structure MRRFAGQTVFVTGGNKGIGRGIAKRFAEEGAKVAIAAIEKDMSAAAATLTEETGTDVIGL CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE TLDVTDIQAVQEAFTEAEAKLGAISVSVQNAGVITIAKVEDLTEREWDLNLDVNTKGVFL EEEHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCHHHH CCQEAVRRFRASGIKGRLINTASGQARQGFIYTPHYAASKFGVVGLTQSLAKELAREGIT HHHHHHHHHHHCCCCCEEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC ANAICPGIIHTEMWDYNDRVWGQMLGEYAPGELMAEWVRGIPMGRAGTPAEVAALVAFLA CCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH SEDAAYITGQTINVDGGLIMS CCCCEEEECCEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11173520 [H]