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The map label for this gene is rbsC [H]

Identifier: 150398321

GI number: 150398321

Start: 3276019

End: 3276993

Strand: Reverse

Name: rbsC [H]

Synonym: Smed_3127

Alternate gene names: 150398321

Gene position: 3276993-3276019 (Counterclockwise)

Preceding gene: 150398327

Following gene: 150398320

Centisome position: 86.65

GC content: 63.08

Gene sequence:

>975_bases
ATGCGGGCTGCGGTGCAAGACAAGCAAGGGGCTGCCGTAAGGCTGCTTCCGTCACTGAAGGGCGCGACCGGTCCGCTGAT
CGGGCTGATCGTGCTGTGCCTTTTCCTGACCTTCGCGACGGACAAGTTCCTGTCGGTGCGGAATTTCCTCAATGTGCTCG
ACCAGATCACGGTGCTGGGCGTCATGGCTGTCGGCATGACTTTCGTCATCCTGATCGGAGGTATCGACCTTGCGGTCGGG
TCGGTCATGGCGCTGGCGATGATGGTACTCGGCTACCTGCACGTCGTGGCCGGCGTGCCGATGTGGCTCGCCATTCCCCT
GGCGCTCGCCGCCGCCTCGCTAAACGGCCTCATCGCGGGCCTCCTCATAACCCGCTTCAACGTACCGGCCTTCATCGCCA
CGCTCGCCATGATGTCGATCACGCGCGGCCTTGCGAACATGGTCACCGACGGCCAGCAGATCATAGGCTTTCCGGCCTGG
TTCAACATGATGGCCATCGTTCGCTTCGGTGGCTTCCTGACGCTGACCGTTGCCGTGATGATCGTGGTCTTCATCGTCGG
ACTTCTCTACCAGCGCTACCGGCATGGCGGGCGCGTGCTTTACGCCGTCGGTGGCAATGCCGAAGTGGCGCGCCTTGCCG
GTATCGACGTTCAGCGCGCGACCGTGCTCGTCTATGTCGTCTGCAGCTTCCTCGCGGGTCTTTCCGGCATGGTGCTTGCG
GCTCGTCTGGACTCGGTCCAGCCGTCGTCGGGCGTGTCCTATGAGCTCGACGCCATCGCGGCGGTCGTCATCGGCGGTAC
TTCGCTTTCCGGCGGAACGGGGGGGATCGGCGGCACCATCATCGGCGTGCTCATCATCGGTGTCCTGCGAAACGGTCTGA
ACCTGCTCAGCGTGTCTCCCTTCATGCAGCAGGTGATCATCGGTGCCGTCATCGTACTCGCCGTCACGGCGGAAACGTAC
CGCAAGCGGAAATAG

Upstream 100 bases:

>100_bases
GTATTGACAGCCTCAGGATTGGTCGTGTATGAATTTACACACAGTAATGAATAATTATGCTTACCGGCAACGGGAAGCGG
GCTATGCGGGAGGACGGCGC

Downstream 100 bases:

>100_bases
CGACATTCGCCCCGTTGCCGAACTTCGGTGGGGCGCTGAAAACGGCCAGCAATGGTGCCGGCCGGCAAAGAGAAGGTGAC
TTCCTGCGAGGGCAGGGCGC

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRAAVQDKQGAAVRLLPSLKGATGPLIGLIVLCLFLTFATDKFLSVRNFLNVLDQITVLGVMAVGMTFVILIGGIDLAVG
SVMALAMMVLGYLHVVAGVPMWLAIPLALAAASLNGLIAGLLITRFNVPAFIATLAMMSITRGLANMVTDGQQIIGFPAW
FNMMAIVRFGGFLTLTVAVMIVVFIVGLLYQRYRHGGRVLYAVGGNAEVARLAGIDVQRATVLVYVVCSFLAGLSGMVLA
ARLDSVQPSSGVSYELDAIAAVVIGGTSLSGGTGGIGGTIIGVLIIGVLRNGLNLLSVSPFMQQVIIGAVIVLAVTAETY
RKRK

Sequences:

>Translated_324_residues
MRAAVQDKQGAAVRLLPSLKGATGPLIGLIVLCLFLTFATDKFLSVRNFLNVLDQITVLGVMAVGMTFVILIGGIDLAVG
SVMALAMMVLGYLHVVAGVPMWLAIPLALAAASLNGLIAGLLITRFNVPAFIATLAMMSITRGLANMVTDGQQIIGFPAW
FNMMAIVRFGGFLTLTVAVMIVVFIVGLLYQRYRHGGRVLYAVGGNAEVARLAGIDVQRATVLVYVVCSFLAGLSGMVLA
ARLDSVQPSSGVSYELDAIAAVVIGGTSLSGGTGGIGGTIIGVLIIGVLRNGLNLLSVSPFMQQVIIGAVIVLAVTAETY
RKRK
>Mature_324_residues
MRAAVQDKQGAAVRLLPSLKGATGPLIGLIVLCLFLTFATDKFLSVRNFLNVLDQITVLGVMAVGMTFVILIGGIDLAVG
SVMALAMMVLGYLHVVAGVPMWLAIPLALAAASLNGLIAGLLITRFNVPAFIATLAMMSITRGLANMVTDGQQIIGFPAW
FNMMAIVRFGGFLTLTVAVMIVVFIVGLLYQRYRHGGRVLYAVGGNAEVARLAGIDVQRATVLVYVVCSFLAGLSGMVLA
ARLDSVQPSSGVSYELDAIAAVVIGGTSLSGGTGGIGGTIIGVLIIGVLRNGLNLLSVSPFMQQVIIGAVIVLAVTAETY
RKRK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=42.7631578947368, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=39.7394136807818, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI145693152, Length=277, Percent_Identity=36.101083032491, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI87082395, Length=271, Percent_Identity=39.8523985239852, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1790524, Length=289, Percent_Identity=34.6020761245675, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=43.75, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788471, Length=316, Percent_Identity=34.1772151898734, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693214, Length=262, Percent_Identity=33.969465648855, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=29.8305084745763, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=30.3571428571429, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33780; Mature: 33780

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAVQDKQGAAVRLLPSLKGATGPLIGLIVLCLFLTFATDKFLSVRNFLNVLDQITVLG
CCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAVGMTFVILIGGIDLAVGSVMALAMMVLGYLHVVAGVPMWLAIPLALAAASLNGLIAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLITRFNVPAFIATLAMMSITRGLANMVTDGQQIIGFPAWFNMMAIVRFGGFLTLTVAVM
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHH
IVVFIVGLLYQRYRHGGRVLYAVGGNAEVARLAGIDVQRATVLVYVVCSFLAGLSGMVLA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLDSVQPSSGVSYELDAIAAVVIGGTSLSGGTGGIGGTIIGVLIIGVLRNGLNLLSVSP
HHHCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
FMQQVIIGAVIVLAVTAETYRKRK
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAAVQDKQGAAVRLLPSLKGATGPLIGLIVLCLFLTFATDKFLSVRNFLNVLDQITVLG
CCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAVGMTFVILIGGIDLAVGSVMALAMMVLGYLHVVAGVPMWLAIPLALAAASLNGLIAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LLITRFNVPAFIATLAMMSITRGLANMVTDGQQIIGFPAWFNMMAIVRFGGFLTLTVAVM
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHH
IVVFIVGLLYQRYRHGGRVLYAVGGNAEVARLAGIDVQRATVLVYVVCSFLAGLSGMVLA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARLDSVQPSSGVSYELDAIAAVVIGGTSLSGGTGGIGGTIIGVLIIGVLRNGLNLLSVSP
HHHCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
FMQQVIIGAVIVLAVTAETYRKRK
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]