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The map label for this gene is rbsB [H]

Identifier: 150398320

GI number: 150398320

Start: 3274961

End: 3275893

Strand: Reverse

Name: rbsB [H]

Synonym: Smed_3126

Alternate gene names: 150398320

Gene position: 3275893-3274961 (Counterclockwise)

Preceding gene: 150398321

Following gene: 150398319

Centisome position: 86.62

GC content: 62.17

Gene sequence:

>933_bases
ATGAAACTGTCCACACTGCTGGTGGCCGCAACCACCGCTTCGGTCCTTGCGCTTCCCGCATCCGCAGCCGAGGTCAAGAA
GATCGGCCTTGCTGTTCCGAATCTTCAGGCCGACTTCTTCAACCAGATCAAGCTCGGTGTCGAAAAGCACGCCAGGGAAA
AGGGCCTCGAAGTGGTGGTCGTCGACGCGAAGAACGACACCAACACGCAGGTCAGCCAGGTACAGGACCTGATGATCCAG
GACATCGACGCCTTCATCTATATCCCGGCCGGTGCCGCGGCGGCTGCGGTCCCGACCCGCCTTGCCCGCGAAGCCGGCAT
TCCGGTCATCAACGTCGACCGCGTCCCGGAGGGTGCGCCGGGCGACACCTTCATCGCCGGAGAGAGCGTCGAATCCGCCT
ACGCCGTCTGCAAGTTCATCATCGAGAAGGCCGGCGGCTCGGGCAAGATGGCAATCATCCACGGGCAGAAGGGCACAACG
CCGGAGGTCGACCGCTTCACCGGCTGCAAGCGCGCCATTGACGAGAACAAGGGCGTCGAGCTTATCGACCAGCAGTGGAG
CAACATGTGGTCGGCCGATGAAGGCTTCTCGATCGCGCAGAACATGCTGCAGGCAAATCCGGACATCACGATCATTTTCG
GCCAGGCCGACGGTCTCGCCATGGGGGCGGCCAAGGCGGTCGACGTCGCCAATCTCTCCGACAAGGTGATCATCGGCGGC
TATGACGGCGACGTCTCGGCGCTCGAATACCTCGCCAGGTGCAAGGGCCCGTTCATCGCCACCGCAACGCAGAGCACGCA
AAAAATGGGCGTTCTTGCCGTCGAATCCGCACTTGCCGTTGCGGCGGGCGAGAAGGTCGAAGAGCGTCAGACGCCGAATG
CCGTGCTGACGACCTGCGACAACGCTCCGGAATTCGTAAAGAACCATCCGTAA

Upstream 100 bases:

>100_bases
CGGTGGGGCGCTGAAAACGGCCAGCAATGGTGCCGGCCGGCAAAGAGAAGGTGACTTCCTGCGAGGGCAGGGCGCCACCG
GGCAAATCGGAGGAGAAACT

Downstream 100 bases:

>100_bases
CCCGATAGCCGAAAGGCAGCAGCGCCATGACGCCCCACTCTCCCATCCTGTCGCTCCGTCGCATCCGCAAATCCTACGGT
CCGATCAAGGTTCTCCACGG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVVDAKNDTNTQVSQVQDLMIQ
DIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAPGDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTT
PEVDRFTGCKRAIDENKGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG
YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCDNAPEFVKNHP

Sequences:

>Translated_310_residues
MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVVDAKNDTNTQVSQVQDLMIQ
DIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAPGDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTT
PEVDRFTGCKRAIDENKGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG
YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCDNAPEFVKNHP
>Mature_310_residues
MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVVDAKNDTNTQVSQVQDLMIQ
DIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAPGDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTT
PEVDRFTGCKRAIDENKGVELIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG
YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCDNAPEFVKNHP

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=288, Percent_Identity=30.5555555555556, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790526, Length=300, Percent_Identity=26, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789990, Length=243, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32582; Mature: 32582

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV
CCCHHEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP
EECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
GDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAIDENKGVE
CCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
LIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCEEEEC
YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCD
CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECC
NAPEFVKNHP
CCHHHHCCCC
>Mature Secondary Structure
MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV
CCCHHEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP
EECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
GDTFIAGESVESAYAVCKFIIEKAGGSGKMAIIHGQKGTTPEVDRFTGCKRAIDENKGVE
CCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCH
LIDQQWSNMWSADEGFSIAQNMLQANPDITIIFGQADGLAMGAAKAVDVANLSDKVIIGG
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHEEECCCCCCEEEEC
YDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCD
CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECC
NAPEFVKNHP
CCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]