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The map label for this gene is ycaR [C]

Identifier: 150398241

GI number: 150398241

Start: 3196143

End: 3196331

Strand: Direct

Name: ycaR [C]

Synonym: Smed_3047

Alternate gene names: 150398241

Gene position: 3196143-3196331 (Clockwise)

Preceding gene: 150398240

Following gene: 150398243

Centisome position: 84.51

GC content: 60.32

Gene sequence:

>189_bases
ATGGACGTCAACGCAAGCAAGGTCGACCCGAAACTCCTGGAACTGCTCGTCTGCCCCCTGACCAAGGGCCGCCTCAGCTA
CGATCCGGAAGCCAACGAACTGGTCTCCGAAAAGGCCCGCCTCGCCTATCCGATCCGCGACGGCGTGCCGATCATGCTGA
TCTCGGAGGCACGCAAGATCGAAGAATAA

Upstream 100 bases:

>100_bases
CCCGACCTCAAGACGCGCGCCGAAACGCTGATCGCCATCACCGAGATCGTGCTCGCCAGGGATTTCGGCGATCTCGACAA
CATCCTGCAGTGAAAAGAGC

Downstream 100 bases:

>100_bases
TGTTCGGAGCGGACGCTGCCGCAGACCGAGAAAGAATTCAAATTATCTCAAATCGGCTCGCCGGCGAGCAACCGCGGATC
GTTTCTGCCGGGCGCACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MDVNASKVDPKLLELLVCPLTKGRLSYDPEANELVSEKARLAYPIRDGVPIMLISEARKIEE

Sequences:

>Translated_62_residues
MDVNASKVDPKLLELLVCPLTKGRLSYDPEANELVSEKARLAYPIRDGVPIMLISEARKIEE
>Mature_62_residues
MDVNASKVDPKLLELLVCPLTKGRLSYDPEANELVSEKARLAYPIRDGVPIMLISEARKIEE

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3047_SINMW (A6UDZ3)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001328708.1
- ProteinModelPortal:   A6UDZ3
- SMR:   A6UDZ3
- STRING:   A6UDZ3
- GeneID:   5323926
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_3047
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- ProtClustDB:   CLSK886523
- BioCyc:   SMED366394:SMED_3047-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6939; Mature: 6939

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVNASKVDPKLLELLVCPLTKGRLSYDPEANELVSEKARLAYPIRDGVPIMLISEARKI
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCEEEECCCCCC
EE
CC
>Mature Secondary Structure
MDVNASKVDPKLLELLVCPLTKGRLSYDPEANELVSEKARLAYPIRDGVPIMLISEARKI
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCEEEECCCCCC
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA