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The map label for this gene is hspD [H]

Identifier: 150397913

GI number: 150397913

Start: 2829411

End: 2829872

Strand: Reverse

Name: hspD [H]

Synonym: Smed_2715

Alternate gene names: 150397913

Gene position: 2829872-2829411 (Counterclockwise)

Preceding gene: 150397915

Following gene: 150397911

Centisome position: 74.83

GC content: 58.23

Gene sequence:

>462_bases
ATGCGTCACTTTGATTTTTCTCCCCTCTACCGCTCCACGGTCGGCTTCGACCGCCTTTTCACCATGCTCGATAGCCTTGG
TCAGCCGGATCAGTCGCAGACCTATCCGCCCTATAATATCGAGCGTACCGGCGAAAATGCCTATCGCATCACCATGGCTG
TCGCCGGATTCGACGAAAGCGAGCTCTCTGTCGAAGCGCGCGAAAACACACTGACGATCAAGGGCGAAAAGAGCGAGGAA
AAGGGTGAGGAAACCCAGTTTCTCCATCGCGGTATAGCCAAGCGCGCCTTCGAGCGCCGCTTCCAGCTTGCCGACCACGT
CGAGATCAAGTCCGCTTCTCTGAAGAACGGCCTGCTCCATATCGATCTTCTGCGTGAGATCCCCGAAACGGCCAAGCCTC
GCCGCATCGAGATCAGCGCGGCAGCCTCGCAGCCGAAGCAGATCGAGGCGCAGACCGCCTAA

Upstream 100 bases:

>100_bases
GCGCGGACGCCGAACAAGGGTCCGTTCACCGGTCGAGCCACAGCCGGAACGGGGTGGCAGGCCAGATATCGCAACCGTTG
CTCTTATGGAGGACGACACC

Downstream 100 bases:

>100_bases
GTCGCCGCATCGACATCGGAAAGAAAAAGACGGCGCTCGAAAGGGCGCCGTTTTCGATTGCTCAGGTGAGCGTTGCCGGA
ACAGCGGCTCCCTCAAGCTC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRHFDFSPLYRSTVGFDRLFTMLDSLGQPDQSQTYPPYNIERTGENAYRITMAVAGFDESELSVEARENTLTIKGEKSEE
KGEETQFLHRGIAKRAFERRFQLADHVEIKSASLKNGLLHIDLLREIPETAKPRRIEISAAASQPKQIEAQTA

Sequences:

>Translated_153_residues
MRHFDFSPLYRSTVGFDRLFTMLDSLGQPDQSQTYPPYNIERTGENAYRITMAVAGFDESELSVEARENTLTIKGEKSEE
KGEETQFLHRGIAKRAFERRFQLADHVEIKSASLKNGLLHIDLLREIPETAKPRRIEISAAASQPKQIEAQTA
>Mature_153_residues
MRHFDFSPLYRSTVGFDRLFTMLDSLGQPDQSQTYPPYNIERTGENAYRITMAVAGFDESELSVEARENTLTIKGEKSEE
KGEETQFLHRGIAKRAFERRFQLADHVEIKSASLKNGLLHIDLLREIPETAKPRRIEISAAASQPKQIEAQTA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=139, Percent_Identity=56.1151079136691, Blast_Score=163, Evalue=5e-42,
Organism=Escherichia coli, GI87082316, Length=139, Percent_Identity=44.6043165467626, Blast_Score=129, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17428; Mature: 17428

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHFDFSPLYRSTVGFDRLFTMLDSLGQPDQSQTYPPYNIERTGENAYRITMAVAGFDES
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCC
ELSVEARENTLTIKGEKSEEKGEETQFLHRGIAKRAFERRFQLADHVEIKSASLKNGLLH
CCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHCCCCEE
IDLLREIPETAKPRRIEISAAASQPKQIEAQTA
HHHHHHCHHCCCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRHFDFSPLYRSTVGFDRLFTMLDSLGQPDQSQTYPPYNIERTGENAYRITMAVAGFDES
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCC
ELSVEARENTLTIKGEKSEEKGEETQFLHRGIAKRAFERRFQLADHVEIKSASLKNGLLH
CCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHCCCCEE
IDLLREIPETAKPRRIEISAAASQPKQIEAQTA
HHHHHHCHHCCCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]