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The map label for this gene is pecT [H]

Identifier: 150397911

GI number: 150397911

Start: 2827417

End: 2828262

Strand: Reverse

Name: pecT [H]

Synonym: Smed_2713

Alternate gene names: 150397911

Gene position: 2828262-2827417 (Counterclockwise)

Preceding gene: 150397913

Following gene: 150397909

Centisome position: 74.78

GC content: 63.95

Gene sequence:

>846_bases
GTGCTGGATCTCGTGCAATTGCGCAGCTTCGTGGCGCTCGAACAAATGGGAAGCTTCACGCTGGCTGCGGAAAAACTTGG
CCTCGGCCAATCCACCGTCAGCCAGCATATCCAGCGGCTCGAAGCGGCACTCGGCCGCAAGCTTGTCACGCGCGATACGC
ATCGCGTTTCGTTGACGGCCGACGGAGAGGCGCTTCTCGGCTATGCCCGTAAGATGCTCGCAATCGACAGCGAGGTGGAG
GCTCTTTTTGCCGAAAGCAGCCTGCGCGGCCGCTTGCGACTGGGCGTTTCCGAGGATTTCGTCACCAGCAGGCTCCCGGG
TGTTCTGGAGGATTTCGTACGCACCCATCCGTCGGTCGATCTGGAACTGACGGTCGCGCTCAGCGGGGTGCTGTACCAGA
TGCAGGACAATGGCGAGATCGACCTCGTGCTGGCCAAGCGGCGTCTCGGCGATGCGCGGGGACAGCTTGTCTACCGCGAG
CCGCTGGTGTGGCTCGCGCGCGATCCGGAGCGGATCCTCCGTGATCGGACGTTGCCGCTCATCGCCTTCCCGCCGCCGAG
CATCACGCGCAGCGTCGCGATCGAAACGCTCGACCGTCATCGTATCCCATGGAGAATCGTCTGCACCTGCGGAAGCCTGA
GCGGGTTGACGGCCGCGGCGCGCGCCGGCATGGGCATTCTCGTCCAGCCGCGCAGCATGGTGCCGCAGGGTCTCAAGGAA
TTGCCGGCCGGAAACCTTCCGCCGCTTGAAGACGTCGAATTCGTGCTTGTGCCGAGCAAGGGCGCCGACCGCAAACTGAT
CGCCGCACTCTCCAGCGAGATCCTTTCGAAGGTTCGTGCGCTCTAG

Upstream 100 bases:

>100_bases
GCGGCGCATGTCGGATCTTCGAGCAAAAGGATGCTTGCCGAGAAAGCGCATTGTGAAGCAGGATGCAAGAAATAACAGCT
ATTGCGAATTAGGATAAGCG

Downstream 100 bases:

>100_bases
AGCCTTTCCTGCTTTATATGGATAACCTCTGATCAGCAGGCGGCGACGAAGCGGTCGACATCCTCGGCGCGCGTCGCAAA
GCTGGTGACGAGGCGATAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLDLVQLRSFVALEQMGSFTLAAEKLGLGQSTVSQHIQRLEAALGRKLVTRDTHRVSLTADGEALLGYARKMLAIDSEVE
ALFAESSLRGRLRLGVSEDFVTSRLPGVLEDFVRTHPSVDLELTVALSGVLYQMQDNGEIDLVLAKRRLGDARGQLVYRE
PLVWLARDPERILRDRTLPLIAFPPPSITRSVAIETLDRHRIPWRIVCTCGSLSGLTAAARAGMGILVQPRSMVPQGLKE
LPAGNLPPLEDVEFVLVPSKGADRKLIAALSSEILSKVRAL

Sequences:

>Translated_281_residues
MLDLVQLRSFVALEQMGSFTLAAEKLGLGQSTVSQHIQRLEAALGRKLVTRDTHRVSLTADGEALLGYARKMLAIDSEVE
ALFAESSLRGRLRLGVSEDFVTSRLPGVLEDFVRTHPSVDLELTVALSGVLYQMQDNGEIDLVLAKRRLGDARGQLVYRE
PLVWLARDPERILRDRTLPLIAFPPPSITRSVAIETLDRHRIPWRIVCTCGSLSGLTAAARAGMGILVQPRSMVPQGLKE
LPAGNLPPLEDVEFVLVPSKGADRKLIAALSSEILSKVRAL
>Mature_281_residues
MLDLVQLRSFVALEQMGSFTLAAEKLGLGQSTVSQHIQRLEAALGRKLVTRDTHRVSLTADGEALLGYARKMLAIDSEVE
ALFAESSLRGRLRLGVSEDFVTSRLPGVLEDFVRTHPSVDLELTVALSGVLYQMQDNGEIDLVLAKRRLGDARGQLVYRE
PLVWLARDPERILRDRTLPLIAFPPPSITRSVAIETLDRHRIPWRIVCTCGSLSGLTAAARAGMGILVQPRSMVPQGLKE
LPAGNLPPLEDVEFVLVPSKGADRKLIAALSSEILSKVRAL

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=266, Percent_Identity=31.203007518797, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=29.1828793774319, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=33.1081081081081, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693193, Length=117, Percent_Identity=35.042735042735, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=142, Percent_Identity=33.0985915492958, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=157, Percent_Identity=32.484076433121, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30786; Mature: 30786

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLVQLRSFVALEQMGSFTLAAEKLGLGQSTVSQHIQRLEAALGRKLVTRDTHRVSLTA
CCCHHHHHHHHHHHHHCCCEEHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEE
DGEALLGYARKMLAIDSEVEALFAESSLRGRLRLGVSEDFVTSRLPGVLEDFVRTHPSVD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCC
LELTVALSGVLYQMQDNGEIDLVLAKRRLGDARGQLVYREPLVWLARDPERILRDRTLPL
EEEEEEEEEEEEEECCCCCEEEEEECHHCCCCCCCEEEECCEEEEECCHHHHHHCCCCCE
IAFPPPSITRSVAIETLDRHRIPWRIVCTCGSLSGLTAAARAGMGILVQPRSMVPQGLKE
EEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCEEEECCHHHHHHHHHH
LPAGNLPPLEDVEFVLVPSKGADRKLIAALSSEILSKVRAL
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDLVQLRSFVALEQMGSFTLAAEKLGLGQSTVSQHIQRLEAALGRKLVTRDTHRVSLTA
CCCHHHHHHHHHHHHHCCCEEHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEE
DGEALLGYARKMLAIDSEVEALFAESSLRGRLRLGVSEDFVTSRLPGVLEDFVRTHPSVD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCHHHHHHHHHCCCCC
LELTVALSGVLYQMQDNGEIDLVLAKRRLGDARGQLVYREPLVWLARDPERILRDRTLPL
EEEEEEEEEEEEEECCCCCEEEEEECHHCCCCCCCEEEECCEEEEECCHHHHHHCCCCCE
IAFPPPSITRSVAIETLDRHRIPWRIVCTCGSLSGLTAAARAGMGILVQPRSMVPQGLKE
EEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCEEEECCHHHHHHHHHH
LPAGNLPPLEDVEFVLVPSKGADRKLIAALSSEILSKVRAL
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]