| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397832
Identifier: 150397832
GI number: 150397832
Start: 2736086
End: 2736964
Strand: Direct
Name: 150397832
Synonym: Smed_2634
Alternate gene names: NA
Gene position: 2736086-2736964 (Clockwise)
Preceding gene: 150397831
Following gene: 150397833
Centisome position: 72.35
GC content: 61.43
Gene sequence:
>879_bases ATGAGCCGCGTGTTCGCCAGTCCGGAGGGGCTTAGCCCCTCCTCTCCTGTGGCTGCACGCCACGCGTTCGTGACGCTCGT CACCAATAGCGAGTACGCGCTCGGCGCGCGGGCCCTGCTGCGATCGATCCGGCTCACGCGGACACCGGCGGATATTGTGG TGCTTCACACCGGCGCAGTGAGCGCATCCGACCTCGAGCCGCTGACCGAATTCGACTGCCGCCTGATCGAAACGGAGCTC CTGCCGCTTTCGGACGCGTTCAACGCCCGGCATCAGCGCCGCAACGTCCACGAGCAGGCGCCTTTCACGAAGGGACGGAA GCCAGGCTTCCACTCGCCGCTCGACAATTTTTGCAAGATAAGGCTATGGCAGCTCGTCGAATACGAACGCTGCGTCTTCA TCGACGCCGATGCGCTCGTGCTGCACAACATAGACAAACTGTTCTCCTATCCGGAATTTGCCGCTGCGCCGAATGTCTAT GAGAACCTCTCAGACTTCCACCGCATGAATTCCGGCGTCTTCGTCGCCGAGCCCTCGGTCGCGACCTTCGAGAAGATGCT TGCGGCGCTCGATGCACCGGACGCCTTCTGGCCACGCACGGACCAGACCTTTCTTCAAAGCTTCTTCCCGGATTGGCACG GCCTGCCGGTAACGATGAATATGCTCCAATATGTCTGGTTCAACCTGCCTCAGCTTTGGGACTGGCGCTCGATCGGAGTG CTTCACTACCAGTATGAAAAGCCGTGGGAAAAGGATCATCCGCGCGCGGACGCCCTGCGGCCTTTGATCGATCTCTGGCA TGCATATCTGACGGGCGACCGGATTCCCGATATTGCCGCTCTCGCCAACCCGGCGCACGCCGGCCCCACGTCCCCATGA
Upstream 100 bases:
>100_bases GCGTCGACCGCTCGCGCGTGCCGGCTGTTTCCGCCTGGACGAAGGACATCGCTCCGTTGATCAACCACGATCCGGAGGGC AAGCGGCTGAAATCCGTTTC
Downstream 100 bases:
>100_bases GCAGCGCCGCCACGACGCGCGTTCTCATCTCCGGCGGAACCGGATTCGTCGGCCGCTTCATCGTCGAGCACCTGCTGGCA AACGGCTATCACGTCACGGT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyltransferase Protein; Glycosyltransferase Family 8 Protein; Glycosyl Transferase Protein; Glycosyl Transferase
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSRVFASPEGLSPSSPVAARHAFVTLVTNSEYALGARALLRSIRLTRTPADIVVLHTGAVSASDLEPLTEFDCRLIETEL LPLSDAFNARHQRRNVHEQAPFTKGRKPGFHSPLDNFCKIRLWQLVEYERCVFIDADALVLHNIDKLFSYPEFAAAPNVY ENLSDFHRMNSGVFVAEPSVATFEKMLAALDAPDAFWPRTDQTFLQSFFPDWHGLPVTMNMLQYVWFNLPQLWDWRSIGV LHYQYEKPWEKDHPRADALRPLIDLWHAYLTGDRIPDIAALANPAHAGPTSP
Sequences:
>Translated_292_residues MSRVFASPEGLSPSSPVAARHAFVTLVTNSEYALGARALLRSIRLTRTPADIVVLHTGAVSASDLEPLTEFDCRLIETEL LPLSDAFNARHQRRNVHEQAPFTKGRKPGFHSPLDNFCKIRLWQLVEYERCVFIDADALVLHNIDKLFSYPEFAAAPNVY ENLSDFHRMNSGVFVAEPSVATFEKMLAALDAPDAFWPRTDQTFLQSFFPDWHGLPVTMNMLQYVWFNLPQLWDWRSIGV LHYQYEKPWEKDHPRADALRPLIDLWHAYLTGDRIPDIAALANPAHAGPTSP >Mature_291_residues SRVFASPEGLSPSSPVAARHAFVTLVTNSEYALGARALLRSIRLTRTPADIVVLHTGAVSASDLEPLTEFDCRLIETELL PLSDAFNARHQRRNVHEQAPFTKGRKPGFHSPLDNFCKIRLWQLVEYERCVFIDADALVLHNIDKLFSYPEFAAAPNVYE NLSDFHRMNSGVFVAEPSVATFEKMLAALDAPDAFWPRTDQTFLQSFFPDWHGLPVTMNMLQYVWFNLPQLWDWRSIGVL HYQYEKPWEKDHPRADALRPLIDLWHAYLTGDRIPDIAALANPAHAGPTSP
Specific function: Unknown
COG id: COG5597
COG function: function code M; Alpha-N-acetylglucosamine transferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI296040507, Length=224, Percent_Identity=35.7142857142857, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI296040505, Length=224, Percent_Identity=35.2678571428571, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI20127457, Length=224, Percent_Identity=35.7142857142857, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI296040445, Length=211, Percent_Identity=35.0710900473934, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI119964690, Length=211, Percent_Identity=35.0710900473934, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI119943093, Length=192, Percent_Identity=35.9375, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI296040440, Length=192, Percent_Identity=35.9375, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17564678, Length=240, Percent_Identity=30.8333333333333, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17568217, Length=196, Percent_Identity=34.1836734693878, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17568215, Length=196, Percent_Identity=34.1836734693878, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25153118, Length=196, Percent_Identity=34.1836734693878, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24656813, Length=240, Percent_Identity=34.5833333333333, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI281363907, Length=240, Percent_Identity=34.5833333333333, Blast_Score=104, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33151; Mature: 33020
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVFASPEGLSPSSPVAARHAFVTLVTNSEYALGARALLRSIRLTRTPADIVVLHTGAV CCCCCCCCCCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC SASDLEPLTEFDCRLIETELLPLSDAFNARHQRRNVHEQAPFTKGRKPGFHSPLDNFCKI CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH RLWQLVEYERCVFIDADALVLHNIDKLFSYPEFAAAPNVYENLSDFHRMNSGVFVAEPSV HHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCEEEECCCH ATFEKMLAALDAPDAFWPRTDQTFLQSFFPDWHGLPVTMNMLQYVWFNLPQLWDWRSIGV HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCE LHYQYEKPWEKDHPRADALRPLIDLWHAYLTGDRIPDIAALANPAHAGPTSP EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCC >Mature Secondary Structure SRVFASPEGLSPSSPVAARHAFVTLVTNSEYALGARALLRSIRLTRTPADIVVLHTGAV CCCCCCCCCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC SASDLEPLTEFDCRLIETELLPLSDAFNARHQRRNVHEQAPFTKGRKPGFHSPLDNFCKI CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH RLWQLVEYERCVFIDADALVLHNIDKLFSYPEFAAAPNVYENLSDFHRMNSGVFVAEPSV HHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCEEEECCCH ATFEKMLAALDAPDAFWPRTDQTFLQSFFPDWHGLPVTMNMLQYVWFNLPQLWDWRSIGV HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCE LHYQYEKPWEKDHPRADALRPLIDLWHAYLTGDRIPDIAALANPAHAGPTSP EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA