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The map label for this gene is 150397729

Identifier: 150397729

GI number: 150397729

Start: 2629037

End: 2629828

Strand: Direct

Name: 150397729

Synonym: Smed_2531

Alternate gene names: NA

Gene position: 2629037-2629828 (Clockwise)

Preceding gene: 150397728

Following gene: 150397730

Centisome position: 69.52

GC content: 60.73

Gene sequence:

>792_bases
ATGTTCATACCGCTGCATGATAGAAACGAGCTGAAGCACATCAGAATGCAATATGTGACGATCGCGCTGATCCTCACCAA
CATCGTCGTCTGGCTCGTCACGGTGCCGGTGGCGAGCGAGGAATTCGCCAATGCGGCGATCCTCGGGCTCGGCTACATTC
CTGCGATCATCTTCGATTATGCCGATCTCGACCCGTCGCTGGTGATCGTCCCCGATGGGTTCACCTTCCTCACCTATTCG
TTTCTGCATGGCGATCTTTCGCATCTTGCCATGAACATGCTTTTCCTTTGGGTTTTCGGCGACAATGTAGAGGACGCGCT
CGGGCACTTCCGTTTCCTTGTCTTCTACCTCCTGTGTGCTGCCGCCGGAGCATTTGCGCACGGGCTGCTCGACCTCGCCT
CCGAAGCGCCGCTGATTGGCGCCTCCGGCGCGATATCGGGCGTCGTGGCCGCCTATTTTCTCCTGCACCCGAAGGTGCGG
GTCTGGGTGCTCGTGCTCTTCCGGATCCCCTTACCCCTTCCCGCAGCCATTCCGCTCGCCTTCTGGATCGGCCAGCAGTT
TTTCATGTTGGTGGCAGATACCGACAGCGGCGTTTCCTGGAGTGCGCATGTCGGCGGCATCGTCGCGGGTCTTCTGCTCG
TTGTCATTTTGCGACGCCGCGGTGTGCCCCTGTTCGACCGGACGATCGTTACGCCGCGGGCAGTGGAGCACCGGACAAAG
GCGCCCGAAGAGGTGCTGACCCCGGCATCAGGAGTTTCGAGGCCTGCCCCGCATTGGGGCCGCCCGAGCTGA

Upstream 100 bases:

>100_bases
TTCCTCCGGCATGATTCCAGTTCACCCGGTCTAAAATCATCGTGATCTGATCGGATACGCCTACAAAGACACGTTGCAAC
AGCTCGAGCTCGGGGACCGC

Downstream 100 bases:

>100_bases
TTTGGAGCGCAGCCTCCAAGAAAACCCGCAACAAACTAAGGTCGATAGCTGCCGGGTTTCAACAGGTTGCGCGCGATCTT
CCGAGCTGATGCCCGAAGAG

Product: rhomboid family protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Integral Membrane Protein; S54 Family Peptidase; Peptidase Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFIPLHDRNELKHIRMQYVTIALILTNIVVWLVTVPVASEEFANAAILGLGYIPAIIFDYADLDPSLVIVPDGFTFLTYS
FLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGAFAHGLLDLASEAPLIGASGAISGVVAAYFLLHPKVR
VWVLVLFRIPLPLPAAIPLAFWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRGVPLFDRTIVTPRAVEHRTK
APEEVLTPASGVSRPAPHWGRPS

Sequences:

>Translated_263_residues
MFIPLHDRNELKHIRMQYVTIALILTNIVVWLVTVPVASEEFANAAILGLGYIPAIIFDYADLDPSLVIVPDGFTFLTYS
FLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGAFAHGLLDLASEAPLIGASGAISGVVAAYFLLHPKVR
VWVLVLFRIPLPLPAAIPLAFWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRGVPLFDRTIVTPRAVEHRTK
APEEVLTPASGVSRPAPHWGRPS
>Mature_263_residues
MFIPLHDRNELKHIRMQYVTIALILTNIVVWLVTVPVASEEFANAAILGLGYIPAIIFDYADLDPSLVIVPDGFTFLTYS
FLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGAFAHGLLDLASEAPLIGASGAISGVVAAYFLLHPKVR
VWVLVLFRIPLPLPAAIPLAFWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRGVPLFDRTIVTPRAVEHRTK
APEEVLTPASGVSRPAPHWGRPS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28785; Mature: 28785

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIPLHDRNELKHIRMQYVTIALILTNIVVWLVTVPVASEEFANAAILGLGYIPAIIFDY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ADLDPSLVIVPDGFTFLTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCA
CCCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AAGAFAHGLLDLASEAPLIGASGAISGVVAAYFLLHPKVRVWVLVLFRIPLPLPAAIPLA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
FWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRGVPLFDRTIVTPRAVEHRTK
HHHHHEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHCC
APEEVLTPASGVSRPAPHWGRPS
CCHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFIPLHDRNELKHIRMQYVTIALILTNIVVWLVTVPVASEEFANAAILGLGYIPAIIFDY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ADLDPSLVIVPDGFTFLTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCA
CCCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AAGAFAHGLLDLASEAPLIGASGAISGVVAAYFLLHPKVRVWVLVLFRIPLPLPAAIPLA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
FWIGQQFFMLVADTDSGVSWSAHVGGIVAGLLLVVILRRRGVPLFDRTIVTPRAVEHRTK
HHHHHEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHCC
APEEVLTPASGVSRPAPHWGRPS
CCHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA