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The map label for this gene is potC [H]

Identifier: 150397606

GI number: 150397606

Start: 2481644

End: 2482444

Strand: Reverse

Name: potC [H]

Synonym: Smed_2406

Alternate gene names: 150397606

Gene position: 2482444-2481644 (Counterclockwise)

Preceding gene: 150397607

Following gene: 150397605

Centisome position: 65.64

GC content: 61.8

Gene sequence:

>801_bases
ATGACGTCTGCTTTCCGCACGCTCTATTTCTTCCTGATCGGCCTTTTTCTCGCGCTGCCGCTGATCGTCGTTGCCGGTGT
CTCGGTCAATGCGAAGCAGACGCTCGCCTTCCCCCCCCAGGGCTTCTCCACCTCATGGTATGGCGAGATCTTCCTGAACC
CGGAATGGCGCAGCGCACTTTTCGCCTCGGTGACGCTGGCGCTTCTTTCGGCCGCACTTGCGGTCGCGATCGCGCTGCCG
CTCGCCTGGTTTCTGTGGCGCCGCGTGGCGCCCTGGGCGAACATCTTCCAGCTTCTGGGCGTCGCGCCCTTCACCCTGCC
TCCGGTCATTACGGCGCTCGGCCTGCTCACCTTCTGGGCGACCGCAGGCTTCTATGGGCAGCCCTGGACCGCCGTCGTCA
GCCATGCGATCTTTTTTGTCACGCTGCCGCTGGTGACGCTGTCGCTTGGCTTCACCTCGATCGATCGGTCGCTGGTCGAA
GCGGCCTCTACGATGGGCGCGGATGACCGCACGATCTTTCGCACCATCGTTCTGCCGCTTATCCTGCCTTACATCGTCTC
CGGCTACGCATTCGCTTTCGTGCTCTCGCTCAACGAATATATCGTTGCTTACATGACCGTCGGCTTCACCATGGAGACGC
TGCCGATCAAGATCTTCAACGCGCTTCGGTACGGCTATACGCCGACCATGGCCTCCGTGACGGTCCTTTTCGTCGTGACG
GCTGCGGTGATCTTCAGCCTCGTCGCCCGCTTCGGAGATCTGCCGAAGCTGCTCGGCGCCATGTCATCGGACGGAAAGTA
G

Upstream 100 bases:

>100_bases
CCAACATGCCGTTCGCCGCGGCGATGGCAGTGTTCCTCGTGCTGGTGACGCTGGGGCTGGTGGCGCTTACGGTGCTTGCC
GGACGAAGGGGAGAAGCGGC

Downstream 100 bases:

>100_bases
ATGAAGCTCGCCGTTCTGCAGATGAAGAGCACCGGCGGCGACGTTGCCGCCAATCTCGCCCGCATCGGGCGGGCGGCGAT
CGACGCTTCCGGCAAGGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTSAFRTLYFFLIGLFLALPLIVVAGVSVNAKQTLAFPPQGFSTSWYGEIFLNPEWRSALFASVTLALLSAALAVAIALP
LAWFLWRRVAPWANIFQLLGVAPFTLPPVITALGLLTFWATAGFYGQPWTAVVSHAIFFVTLPLVTLSLGFTSIDRSLVE
AASTMGADDRTIFRTIVLPLILPYIVSGYAFAFVLSLNEYIVAYMTVGFTMETLPIKIFNALRYGYTPTMASVTVLFVVT
AAVIFSLVARFGDLPKLLGAMSSDGK

Sequences:

>Translated_266_residues
MTSAFRTLYFFLIGLFLALPLIVVAGVSVNAKQTLAFPPQGFSTSWYGEIFLNPEWRSALFASVTLALLSAALAVAIALP
LAWFLWRRVAPWANIFQLLGVAPFTLPPVITALGLLTFWATAGFYGQPWTAVVSHAIFFVTLPLVTLSLGFTSIDRSLVE
AASTMGADDRTIFRTIVLPLILPYIVSGYAFAFVLSLNEYIVAYMTVGFTMETLPIKIFNALRYGYTPTMASVTVLFVVT
AAVIFSLVARFGDLPKLLGAMSSDGK
>Mature_265_residues
TSAFRTLYFFLIGLFLALPLIVVAGVSVNAKQTLAFPPQGFSTSWYGEIFLNPEWRSALFASVTLALLSAALAVAIALPL
AWFLWRRVAPWANIFQLLGVAPFTLPPVITALGLLTFWATAGFYGQPWTAVVSHAIFFVTLPLVTLSLGFTSIDRSLVEA
ASTMGADDRTIFRTIVLPLILPYIVSGYAFAFVLSLNEYIVAYMTVGFTMETLPIKIFNALRYGYTPTMASVTVLFVVTA
AVIFSLVARFGDLPKLLGAMSSDGK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=30.4147465437788, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787714, Length=230, Percent_Identity=34.7826086956522, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787081, Length=263, Percent_Identity=28.8973384030418, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787369, Length=191, Percent_Identity=25.6544502617801, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28948; Mature: 28816

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAFRTLYFFLIGLFLALPLIVVAGVSVNAKQTLAFPPQGFSTSWYGEIFLNPEWRSAL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHH
FASVTLALLSAALAVAIALPLAWFLWRRVAPWANIFQLLGVAPFTLPPVITALGLLTFWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TAGFYGQPWTAVVSHAIFFVTLPLVTLSLGFTSIDRSLVEAASTMGADDRTIFRTIVLPL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ILPYIVSGYAFAFVLSLNEYIVAYMTVGFTMETLPIKIFNALRYGYTPTMASVTVLFVVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AAVIFSLVARFGDLPKLLGAMSSDGK
HHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TSAFRTLYFFLIGLFLALPLIVVAGVSVNAKQTLAFPPQGFSTSWYGEIFLNPEWRSAL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHH
FASVTLALLSAALAVAIALPLAWFLWRRVAPWANIFQLLGVAPFTLPPVITALGLLTFWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
TAGFYGQPWTAVVSHAIFFVTLPLVTLSLGFTSIDRSLVEAASTMGADDRTIFRTIVLPL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ILPYIVSGYAFAFVLSLNEYIVAYMTVGFTMETLPIKIFNALRYGYTPTMASVTVLFVVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AAVIFSLVARFGDLPKLLGAMSSDGK
HHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]