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The map label for this gene is petR [H]

Identifier: 150397445

GI number: 150397445

Start: 2322842

End: 2323543

Strand: Direct

Name: petR [H]

Synonym: Smed_2245

Alternate gene names: 150397445

Gene position: 2322842-2323543 (Clockwise)

Preceding gene: 150397444

Following gene: 150397446

Centisome position: 61.42

GC content: 60.68

Gene sequence:

>702_bases
ATGATGGCAAAGGCGACAGTCTCCGACGATGCGGCACATCTCCTGGTCGTCGACGACGACCGGCGCATTCGCGACCTGCT
CAACCGCTATCTGGTCGAGCAGGGGTTTCGCGTAACGACGGCAGCCGATGCCGACGAGGCCCGGCGCAAGTTGATAGGCA
TTGATTTCGATCTTCTGGTCGTCGATGTGATGATGCCCGGCGAAAGCGGAATCGCCCTGACCCAGAGCCTCAGACAGATC
AAGTCGGTCCCGATCATCATGCTGACGGCTTTGGCAGAAGCGAATTCGCGTATCGAAGGGCTGGAAGCGGGCGCCGACGA
TTACCTGCCGAAGCCCTTCGAGCCGCGCGAGCTCGTACTCCGGATAAACAATATCCTGCGCCGCAATCAGCCGACACAGA
CGCACAAAGTCGACCAGGTCATTTTCGGGCCGTATACCTTCTCGGTCGTACGCAAGGAACTGCGCCGCGGAGCCGACCAT
ATCCGCCTCACCGATCGTGAGCAGGAGATCATGACGCTGTTTTCGCAGCGAGCCGGCGAAACCATCCCGCGCCACGAATT
GATCGGCGACGACGCCGAGGTCGGCGAGCGGACGATCGACGTGCAGATAAACCGCCTGAGGCGCAAGATCGAGGACGATC
CTTCCAACCCAGTCTGGCTGCAGACCGTTCGCGGAATCGGCTACCGGCTGAGCGTTGACTGA

Upstream 100 bases:

>100_bases
AAACAGGTAGCGCTTGGATCAAGAGAATGGAGACAGCGGCGCCTGGATTACGATGTTTTTAGGTCGGATCCGGCTTTGCC
GGCAATGAGGGTACCGAACG

Downstream 100 bases:

>100_bases
TGATGAGCTCAGAATCAAGGACCGGATCAAGGGGCATGGCAAGCTTTGACGGTTTGAAGCGCGAAGGATCGGCACCGACG
GAGGGTGCCTGGAAGCGCCT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MMAKATVSDDAAHLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIALTQSLRQI
KSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQPTQTHKVDQVIFGPYTFSVVRKELRRGADH
IRLTDREQEIMTLFSQRAGETIPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRLSVD

Sequences:

>Translated_233_residues
MMAKATVSDDAAHLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIALTQSLRQI
KSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQPTQTHKVDQVIFGPYTFSVVRKELRRGADH
IRLTDREQEIMTLFSQRAGETIPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRLSVD
>Mature_233_residues
MMAKATVSDDAAHLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIALTQSLRQI
KSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRRNQPTQTHKVDQVIFGPYTFSVVRKELRRGADH
IRLTDREQEIMTLFSQRAGETIPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRLSVD

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=43.8053097345133, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=38.8646288209607, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=34.8214285714286, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=34.2105263157895, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=32.8828828828829, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1788394, Length=236, Percent_Identity=32.2033898305085, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=34.4827586206897, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=31.6017316017316, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=32.4324324324324, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=35.7466063348416, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790552, Length=222, Percent_Identity=31.0810810810811, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=29.4372294372294, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=27.8026905829596, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=29.9107142857143, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790299, Length=137, Percent_Identity=35.7664233576642, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=33.0434782608696, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788191, Length=126, Percent_Identity=30.952380952381, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26481; Mature: 26481

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAKATVSDDAAHLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLV
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCHHHEE
VDVMMPGESGIALTQSLRQIKSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVL
EEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
RINNILRRNQPTQTHKVDQVIFGPYTFSVVRKELRRGADHIRLTDREQEIMTLFSQRAGE
HHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCC
TIPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRLSVD
CCCCHHHCCCCHHHCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC
>Mature Secondary Structure
MMAKATVSDDAAHLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLV
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCHHHEE
VDVMMPGESGIALTQSLRQIKSVPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVL
EEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
RINNILRRNQPTQTHKVDQVIFGPYTFSVVRKELRRGADHIRLTDREQEIMTLFSQRAGE
HHHHHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCC
TIPRHELIGDDAEVGERTIDVQINRLRRKIEDDPSNPVWLQTVRGIGYRLSVD
CCCCHHHCCCCHHHCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]