| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is kbl [C]
Identifier: 150397425
GI number: 150397425
Start: 2303293
End: 2304480
Strand: Reverse
Name: kbl [C]
Synonym: Smed_2225
Alternate gene names: 150397425
Gene position: 2304480-2303293 (Counterclockwise)
Preceding gene: 150397426
Following gene: 150397424
Centisome position: 60.93
GC content: 62.12
Gene sequence:
>1188_bases ATGACCAAGGCCTTCCTCTCCCATCTCAGCTCGGAACTTGAAGGCCTGAAGCAGGCCGGTCTCTACAAATCCGAGCGTGT CATCACCTCAAAGCAGTCGGGCGAAATCGAAGTCGCTTCCGGTCAGCGTGTCCTGAATTTCTGTGCCAACAACTATCTCG GGCTTGCCGGCAACGAGGAGCTTGCAGACGCGGCGAAGAAGGCCCTCGACCGTTATGGCTACGGCATGGCGTCGGTGCGC TTCATCTGCGGCACGCAGGAGGAGCACAAGGAGCTCGAAGCGCGCATATCCTCCTTCCTCGGCATGGAGGACACGATTCT CTATTCCTCCTGCTTCGATGCCAATGGCGGTCTGTTCGAGACGCTGCTCGGCGAGGACGACGCGATCATCTCCGATGCGC TGAACCATGCTTCGATCATCGATGGCGTGCGTCTCTCCAAGGCCAAGCGCTTCCGCTATGCCAATAACGACATGGCGGCG CTGGAAGAAGAGCTGAAGAAGGCGGAAGGCAGCCGCTTCAAGATGATCGCCACCGACGGCGTCTTCTCGATGGACGGCAT CATCGCCAATCTCGCGGGCGTCTGCGATCTCGCCGAGAAATACGGTGCGATGGTCATGGTGGACGACAGCCATGCGGTCG GTTTCGTCGGCAGGCATGGGCGCGGCTCTGCCGAGCATTGCGGGGTGGAGGGCCGGGTCGACATCATTACCGGCACGCTC GGCAAGGCGCTTGGCGGCGCTTCGGGCGGGTATACGTCGGCAAAGGCCGAGCTCGTCGAATGGCTGCGCCAGCGCTCGCG GCCCTATCTCTTCTCCAACACGCTCGCGCCCGTCATCGCCGCCGCTTCCCTCAAGGTCTTCGAGCTGATCGAAAACGGGG ATGCGCTGCGCGAACGGCTTTCCGCAAACGCGGCGCTTTTCCGGGCAGAGATGTCCAGGCTCGGCTTCACGCTCGCCGGC GAGGGCCATCCGATTATTCCTGTCATGCTCGGGGATGCGGCGCTCGCGCAGGAGATGGCCGCACGCATGCTTGAGAAGGG CGTATACGTCATCGGCTTCTCCTTCCCGGTCGTGCCGAAAGGACAGGCGCGCATTCGCACGCAGATGTCCGCCGCGCACA GCGAAGCGGATATCCGCCGCGCCATAGCCGTCTTCGAGGAGGTGGGCCGAGAGTTGAACGTGATTTAA
Upstream 100 bases:
>100_bases TGAGGGGCATCAGCACGTGGCGTCGGAAACAGATTCCATGAAAAGTGCCACCGTGTTAGTCCTCTAGCTGGTGATTTCCA TCGATTGCGAGCACTCAGCC
Downstream 100 bases:
>100_bases GGGGCGAACGGGGGTCCCGCGCAACGCGGAGGAGCGAGCAATGACCAATATGATGAGGGCACTCGTAAAGACCAGGCCCG AGGTGGGGCTCTGGATGGAG
Product: 2-amino-3-ketobutyrate coenzyme A ligase
Products: NA
Alternate protein names: AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; L-alanine--pimeloyl-CoA ligase [H]
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MTKAFLSHLSSELEGLKQAGLYKSERVITSKQSGEIEVASGQRVLNFCANNYLGLAGNEELADAAKKALDRYGYGMASVR FICGTQEEHKELEARISSFLGMEDTILYSSCFDANGGLFETLLGEDDAIISDALNHASIIDGVRLSKAKRFRYANNDMAA LEEELKKAEGSRFKMIATDGVFSMDGIIANLAGVCDLAEKYGAMVMVDDSHAVGFVGRHGRGSAEHCGVEGRVDIITGTL GKALGGASGGYTSAKAELVEWLRQRSRPYLFSNTLAPVIAAASLKVFELIENGDALRERLSANAALFRAEMSRLGFTLAG EGHPIIPVMLGDAALAQEMAARMLEKGVYVIGFSFPVVPKGQARIRTQMSAAHSEADIRRAIAVFEEVGRELNVI
Sequences:
>Translated_395_residues MTKAFLSHLSSELEGLKQAGLYKSERVITSKQSGEIEVASGQRVLNFCANNYLGLAGNEELADAAKKALDRYGYGMASVR FICGTQEEHKELEARISSFLGMEDTILYSSCFDANGGLFETLLGEDDAIISDALNHASIIDGVRLSKAKRFRYANNDMAA LEEELKKAEGSRFKMIATDGVFSMDGIIANLAGVCDLAEKYGAMVMVDDSHAVGFVGRHGRGSAEHCGVEGRVDIITGTL GKALGGASGGYTSAKAELVEWLRQRSRPYLFSNTLAPVIAAASLKVFELIENGDALRERLSANAALFRAEMSRLGFTLAG EGHPIIPVMLGDAALAQEMAARMLEKGVYVIGFSFPVVPKGQARIRTQMSAAHSEADIRRAIAVFEEVGRELNVI >Mature_394_residues TKAFLSHLSSELEGLKQAGLYKSERVITSKQSGEIEVASGQRVLNFCANNYLGLAGNEELADAAKKALDRYGYGMASVRF ICGTQEEHKELEARISSFLGMEDTILYSSCFDANGGLFETLLGEDDAIISDALNHASIIDGVRLSKAKRFRYANNDMAAL EEELKKAEGSRFKMIATDGVFSMDGIIANLAGVCDLAEKYGAMVMVDDSHAVGFVGRHGRGSAEHCGVEGRVDIITGTLG KALGGASGGYTSAKAELVEWLRQRSRPYLFSNTLAPVIAAASLKVFELIENGDALRERLSANAALFRAEMSRLGFTLAGE GHPIIPVMLGDAALAQEMAARMLEKGVYVIGFSFPVVPKGQARIRTQMSAAHSEADIRRAIAVFEEVGRELNVI
Specific function: Catalyzes the decarboxylative condensation of pimeloyl- CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA [H]
COG id: COG0156
COG function: function code H; 7-keto-8-aminopelargonate synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7657118, Length=384, Percent_Identity=55.9895833333333, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI284448556, Length=409, Percent_Identity=52.5672371638142, Blast_Score=429, Evalue=1e-120, Organism=Homo sapiens, GI83977442, Length=368, Percent_Identity=35.054347826087, Blast_Score=211, Evalue=7e-55, Organism=Homo sapiens, GI83977440, Length=368, Percent_Identity=35.054347826087, Blast_Score=211, Evalue=9e-55, Organism=Homo sapiens, GI83977444, Length=368, Percent_Identity=35.054347826087, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI4502025, Length=378, Percent_Identity=31.7460317460317, Blast_Score=195, Evalue=5e-50, Organism=Homo sapiens, GI40316939, Length=378, Percent_Identity=31.7460317460317, Blast_Score=195, Evalue=5e-50, Organism=Homo sapiens, GI4758668, Length=369, Percent_Identity=33.6043360433604, Blast_Score=193, Evalue=2e-49, Organism=Homo sapiens, GI119220554, Length=369, Percent_Identity=32.520325203252, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI5454084, Length=391, Percent_Identity=26.3427109974425, Blast_Score=116, Evalue=5e-26, Organism=Escherichia coli, GI1790046, Length=397, Percent_Identity=68.2619647355164, Blast_Score=561, Evalue=1e-161, Organism=Escherichia coli, GI1786993, Length=357, Percent_Identity=32.2128851540616, Blast_Score=190, Evalue=2e-49, Organism=Caenorhabditis elegans, GI71994529, Length=397, Percent_Identity=57.4307304785894, Blast_Score=464, Evalue=1e-131, Organism=Caenorhabditis elegans, GI32566772, Length=388, Percent_Identity=29.3814432989691, Blast_Score=178, Evalue=5e-45, Organism=Caenorhabditis elegans, GI17560914, Length=364, Percent_Identity=30.2197802197802, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17560912, Length=364, Percent_Identity=30.2197802197802, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI71982617, Length=276, Percent_Identity=26.4492753623188, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71982625, Length=276, Percent_Identity=26.0869565217391, Blast_Score=108, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6320438, Length=411, Percent_Identity=32.6034063260341, Blast_Score=219, Evalue=4e-58, Organism=Saccharomyces cerevisiae, GI6320267, Length=368, Percent_Identity=30.4347826086957, Blast_Score=180, Evalue=3e-46, Organism=Saccharomyces cerevisiae, GI6323954, Length=275, Percent_Identity=29.0909090909091, Blast_Score=117, Evalue=3e-27, Organism=Drosophila melanogaster, GI24662918, Length=388, Percent_Identity=59.7938144329897, Blast_Score=483, Evalue=1e-136, Organism=Drosophila melanogaster, GI17137420, Length=333, Percent_Identity=33.3333333333333, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI17136286, Length=369, Percent_Identity=32.520325203252, Blast_Score=176, Evalue=2e-44, Organism=Drosophila melanogaster, GI24653280, Length=392, Percent_Identity=27.0408163265306, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI24653276, Length=392, Percent_Identity=27.0408163265306, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI24653278, Length=392, Percent_Identity=27.0408163265306, Blast_Score=123, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011282 - InterPro: IPR001917 - InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.3.1.29; =2.3.1.47 [H]
Molecular weight: Translated: 42533; Mature: 42402
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAFLSHLSSELEGLKQAGLYKSERVITSKQSGEIEVASGQRVLNFCANNYLGLAGNEE CCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCHHHHHHHHCCCCCCCCCHH LADAAKKALDRYGYGMASVRFICGTQEEHKELEARISSFLGMEDTILYSSCFDANGGLFE HHHHHHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHH TLLGEDDAIISDALNHASIIDGVRLSKAKRFRYANNDMAALEEELKKAEGSRFKMIATDG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECC VFSMDGIIANLAGVCDLAEKYGAMVMVDDSHAVGFVGRHGRGSAEHCGVEGRVDIITGTL CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHCCCCCEEEEEECHH GKALGGASGGYTSAKAELVEWLRQRSRPYLFSNTLAPVIAAASLKVFELIENGDALRERL HHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHH SANAALFRAEMSRLGFTLAGEGHPIIPVMLGDAALAQEMAARMLEKGVYVIGFSFPVVPK HHHHHHHHHHHHHCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCC GQARIRTQMSAAHSEADIRRAIAVFEEVGRELNVI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKAFLSHLSSELEGLKQAGLYKSERVITSKQSGEIEVASGQRVLNFCANNYLGLAGNEE CHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCHHHHHHHHCCCCCCCCCHH LADAAKKALDRYGYGMASVRFICGTQEEHKELEARISSFLGMEDTILYSSCFDANGGLFE HHHHHHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHH TLLGEDDAIISDALNHASIIDGVRLSKAKRFRYANNDMAALEEELKKAEGSRFKMIATDG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECC VFSMDGIIANLAGVCDLAEKYGAMVMVDDSHAVGFVGRHGRGSAEHCGVEGRVDIITGTL CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHCCCCCEEEEEECHH GKALGGASGGYTSAKAELVEWLRQRSRPYLFSNTLAPVIAAASLKVFELIENGDALRERL HHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHH SANAALFRAEMSRLGFTLAGEGHPIIPVMLGDAALAQEMAARMLEKGVYVIGFSFPVVPK HHHHHHHHHHHHHCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCC GQARIRTQMSAAHSEADIRRAIAVFEEVGRELNVI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]