Click here to switch to the map view.

The map label for this gene is yhdX [H]

Identifier: 150397300

GI number: 150397300

Start: 2159934

End: 2161142

Strand: Direct

Name: yhdX [H]

Synonym: Smed_2099

Alternate gene names: 150397300

Gene position: 2159934-2161142 (Clockwise)

Preceding gene: 150397299

Following gene: 150397301

Centisome position: 57.11

GC content: 60.38

Gene sequence:

>1209_bases
ATGAATGTGCATCATGCGAAAGCGGCCGAACATGCGGTCGACGACGATCTCCTCTCCGCTCGCCGGCGCCGCAATCGGAT
CAGGTACGGAGCCACCCAGTTTGCCGTGATCGCGGCCGCGATCACCCTGGTGGTCCTTTTTGCGCTTGCCGTGAAGGAAG
GACTTGCCCGGCACGGGATCAGGTTCAGCTTCTCGTTTCTATGGGACGCCGCCGGATTCGACCTCAGCGAGGGCAAAACC
TTCGTCTTCGACGGCACGTTCTGGCTGGCCTTTACGGAGTTCACCTCGGAGCGTTCGATAGCGCAGGCATTCGCCGCCGG
AATCGTGAACACCACCAAGGTGGCGGTTCTCGCCATTGTTCTGAGCACCATGCTCGGAGTCCTGCTCGGTGTAAGTCGGC
TCTCCACCAATTGGGTGGCTCGGAGCCTTTCCTTCTGGTGCGTCGAGTTCGTCCGCAACACGCCGCTCCTTATCCAGCTC
GTCTTCTGGTACTTCGCGGTCATCCTGCATTTCCCACCTATCGCGGCCGCGGCCGAATTCTACGGCGTCGTCATCAGCCA
GCAAGGCCTCTTTTTTCCGGCCCTCGTCTGGAAGGGCGAAGGTTCGCCGGTCGCCATCGCAATGGCGACTGCTTGCTGGG
TCGCAATTCTCGGACTGGTCTTCGACAAGCACAGACTGGTCCGCCGGGTTTGCATGGGTGCCATAGTCGTGCTTCCTTGC
CTGATGCTGCTGACCGGGATCGTGGAACTGGATTTCCCCGTGGCATCGAAGTTTCGGGCCAAAGGTGGTACAGGCATGAG
CCCCGAAATGGCGGCACTGCTTCTGGCGATCGTCGTCAACAGCGCTTCCTACATTGCGGAAATCGTGCGTGGAGCGATCG
ATGCCTTGCCAAAGGGGCAATGGGAGGCGGCAGCCTCCCTCGGACTGAGCCGCCGCGATACCGTCCACGACATCATTCTC
CCGCAGGTCTTCCGGGTCGTGCTGCCTTCCTTCGGAAACCAGTATATCAGCCTCACGAAAAACACGGCCCTCGGCATTGC
GGTCGGATATCCCGAACTCTTCAACATCTACGGCACCATAGCGAACCAAACGGGCCATAGCCTCGAAGGCATCCTCATCG
TCATGGCGTCCTATCTGATCCTTAGCTGGGCTATCAGCGCGACCGTCGCCTGGGCCGACCGCCGCCTGAGCAAACGCGGA
GCGATGTGA

Upstream 100 bases:

>100_bases
CGGCGCGATCTACTCGCCCCTCTGGAACTGATCCTCTCTACTGACCGAGCCGAGGCGGACGACCCGCCTCGGCTCCTATC
CCGGTTCCAGGTATCCCGAC

Downstream 100 bases:

>100_bases
TGATCGCCAGATTCCTGAAATGGTCGCGGCACAATCTGTTCGGCAAGCCGTTCGACATTCTGCTGTCTCTCACCGTCATA
CCCGGCTTTCTCTGGCTGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNVHHAKAAEHAVDDDLLSARRRRNRIRYGATQFAVIAAAITLVVLFALAVKEGLARHGIRFSFSFLWDAAGFDLSEGKT
FVFDGTFWLAFTEFTSERSIAQAFAAGIVNTTKVAVLAIVLSTMLGVLLGVSRLSTNWVARSLSFWCVEFVRNTPLLIQL
VFWYFAVILHFPPIAAAAEFYGVVISQQGLFFPALVWKGEGSPVAIAMATACWVAILGLVFDKHRLVRRVCMGAIVVLPC
LMLLTGIVELDFPVASKFRAKGGTGMSPEMAALLLAIVVNSASYIAEIVRGAIDALPKGQWEAAASLGLSRRDTVHDIIL
PQVFRVVLPSFGNQYISLTKNTALGIAVGYPELFNIYGTIANQTGHSLEGILIVMASYLILSWAISATVAWADRRLSKRG
AM

Sequences:

>Translated_402_residues
MNVHHAKAAEHAVDDDLLSARRRRNRIRYGATQFAVIAAAITLVVLFALAVKEGLARHGIRFSFSFLWDAAGFDLSEGKT
FVFDGTFWLAFTEFTSERSIAQAFAAGIVNTTKVAVLAIVLSTMLGVLLGVSRLSTNWVARSLSFWCVEFVRNTPLLIQL
VFWYFAVILHFPPIAAAAEFYGVVISQQGLFFPALVWKGEGSPVAIAMATACWVAILGLVFDKHRLVRRVCMGAIVVLPC
LMLLTGIVELDFPVASKFRAKGGTGMSPEMAALLLAIVVNSASYIAEIVRGAIDALPKGQWEAAASLGLSRRDTVHDIIL
PQVFRVVLPSFGNQYISLTKNTALGIAVGYPELFNIYGTIANQTGHSLEGILIVMASYLILSWAISATVAWADRRLSKRG
AM
>Mature_402_residues
MNVHHAKAAEHAVDDDLLSARRRRNRIRYGATQFAVIAAAITLVVLFALAVKEGLARHGIRFSFSFLWDAAGFDLSEGKT
FVFDGTFWLAFTEFTSERSIAQAFAAGIVNTTKVAVLAIVLSTMLGVLLGVSRLSTNWVARSLSFWCVEFVRNTPLLIQL
VFWYFAVILHFPPIAAAAEFYGVVISQQGLFFPALVWKGEGSPVAIAMATACWVAILGLVFDKHRLVRRVCMGAIVVLPC
LMLLTGIVELDFPVASKFRAKGGTGMSPEMAALLLAIVVNSASYIAEIVRGAIDALPKGQWEAAASLGLSRRDTVHDIIL
PQVFRVVLPSFGNQYISLTKNTALGIAVGYPELFNIYGTIANQTGHSLEGILIVMASYLILSWAISATVAWADRRLSKRG
AM

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=357, Percent_Identity=35.2941176470588, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1788226, Length=118, Percent_Identity=39.8305084745763, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082239, Length=141, Percent_Identity=36.1702127659575, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787030, Length=128, Percent_Identity=39.84375, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787087, Length=101, Percent_Identity=34.6534653465347, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786873, Length=135, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788645, Length=122, Percent_Identity=32.7868852459016, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787086, Length=114, Percent_Identity=34.2105263157895, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=25.5813953488372, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43727; Mature: 43727

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVHHAKAAEHAVDDDLLSARRRRNRIRYGATQFAVIAAAITLVVLFALAVKEGLARHGI
CCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RFSFSFLWDAAGFDLSEGKTFVFDGTFWLAFTEFTSERSIAQAFAAGIVNTTKVAVLAIV
EEEHHHHHHCCCCCCCCCCEEEEECEEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LSTMLGVLLGVSRLSTNWVARSLSFWCVEFVRNTPLLIQLVFWYFAVILHFPPIAAAAEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
YGVVISQQGLFFPALVWKGEGSPVAIAMATACWVAILGLVFDKHRLVRRVCMGAIVVLPC
HHHHEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLLTGIVELDFPVASKFRAKGGTGMSPEMAALLLAIVVNSASYIAEIVRGAIDALPKGQ
HHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
WEAAASLGLSRRDTVHDIILPQVFRVVLPSFGNQYISLTKNTALGIAVGYPELFNIYGTI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHH
ANQTGHSLEGILIVMASYLILSWAISATVAWADRRLSKRGAM
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNVHHAKAAEHAVDDDLLSARRRRNRIRYGATQFAVIAAAITLVVLFALAVKEGLARHGI
CCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RFSFSFLWDAAGFDLSEGKTFVFDGTFWLAFTEFTSERSIAQAFAAGIVNTTKVAVLAIV
EEEHHHHHHCCCCCCCCCCEEEEECEEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LSTMLGVLLGVSRLSTNWVARSLSFWCVEFVRNTPLLIQLVFWYFAVILHFPPIAAAAEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHH
YGVVISQQGLFFPALVWKGEGSPVAIAMATACWVAILGLVFDKHRLVRRVCMGAIVVLPC
HHHHEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMLLTGIVELDFPVASKFRAKGGTGMSPEMAALLLAIVVNSASYIAEIVRGAIDALPKGQ
HHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
WEAAASLGLSRRDTVHDIILPQVFRVVLPSFGNQYISLTKNTALGIAVGYPELFNIYGTI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHH
ANQTGHSLEGILIVMASYLILSWAISATVAWADRRLSKRGAM
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]