| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yitJ [H]
Identifier: 150396986
GI number: 150396986
Start: 1865800
End: 1866903
Strand: Direct
Name: yitJ [H]
Synonym: Smed_1783
Alternate gene names: 150396986
Gene position: 1865800-1866903 (Clockwise)
Preceding gene: 150396985
Following gene: 150396987
Centisome position: 49.33
GC content: 62.41
Gene sequence:
>1104_bases ATGAGCCCGGATATCAATCCTTACGATCCGGGCGCCCCGCTCGACCCGCTCCCCGGCCATTCTTCGCGCGGGCGGCTGGA GCGCGTTCTGCGTCGCGGTGAATTCGCCGTGACCGCCGAGCTCAACCCGCCGGACAGCGCCAATCCGCATGACGTCTACG AGCGCGCGGCGATCTTCGACGGGTGGGTTGACGGCATCAACGCAGTCGACGCCTCGGGCGCCAATTGCCATATGTCTTCC GTCGGTATCTGCGCGCTGCTGACGCGCATGGGCTATGCGCCGATCATGCAGATCGCCTGCCGGGACAGAAATCGCATCGC CATTCAGGGCGACGTTCTCGGCGCCTCGGCCATGGGCGTCCAGAACATCATGTGCTTGACGGGCGACGGCGTACAGGCCG GCGACCAGCCCGGGGCCAAGCCCGTCTTCGATCTGGACTGCATGTCCCTGCTCGAGACGGTGCGCATCATGCGCGACAAT TCCAAGTTTCTTTCGGGCCGCAAGCTATCGACGCCGCCCCACGTATTTCTTGGAGCGGCAATCAACCCTTTCGCCCCTCC CTACGATTTCCGCCCCTACCGCCTCGCCAAGAAGATCGAAGCCGGCGCTCAATTCGTCCAGAGCCAGTATTGCTTCGACG TTCCGATGTTCCGCGAATATATGAAAAAGGTGCGCGACCTCGGTTTGCACGAGAAGTGCTTCATCCTGGTGGGCGTCGGG CCGTTGGCTTCCGCCAAGACTGCCCGCTGGATCCGATCCAATGTTCCTGGCATCCACATTCCGGATGGCATTATCAGGCG GCTCGAGGGCGCCCAGGATCAGAAGAAGGAAGGCAAGCAGCTCTGCATCGACGTCATGAACGAGGTGAAGGAGATCGAGG GTGTCTCAGGCGTCCATGTCATGGCGTACCGCCAGGAGGAGTATGTCGCGGAAATCGTACATGAATCAGGCGTCCTGAGG GGCCGCAAGCCGTGGAAGCGCGAAGCCGCGCCGACCGATGCGATGGTTGCCGAACGGCTGGAGCATATTCGCGAAGGCAG GGAGGAAAACCAGCAGCAGATGGCCGAGGCCGCCGCGCACCACCCGCATGAGACAAAGCAGTGA
Upstream 100 bases:
>100_bases AGCCGGTCAATCAGTCGCTGCGCGAGACCTCTTCCTGGTTGCGGGTGACGGCCGAAGCCGCGGCCGCCCGCGAAGCAGCG AAATCGGAGGGCCAGCAGCT
Downstream 100 bases:
>100_bases ACCAGCGGCTTTACTGCATGTTTCCTTTCATCCAATGCGGTAAGGAAGCATGCAGCAGGTCAAAGTGCTCGGACCGTCCG GCACGCTACAAAAACACGAA
Product: methylenetetrahydrofolate reductase
Products: NA
Alternate protein names: Homocysteine S-methyltransferase; S-methylmethionine:homocysteine methyltransferase; 5,10-methylenetetrahydrofolate reductase [H]
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MSPDINPYDPGAPLDPLPGHSSRGRLERVLRRGEFAVTAELNPPDSANPHDVYERAAIFDGWVDGINAVDASGANCHMSS VGICALLTRMGYAPIMQIACRDRNRIAIQGDVLGASAMGVQNIMCLTGDGVQAGDQPGAKPVFDLDCMSLLETVRIMRDN SKFLSGRKLSTPPHVFLGAAINPFAPPYDFRPYRLAKKIEAGAQFVQSQYCFDVPMFREYMKKVRDLGLHEKCFILVGVG PLASAKTARWIRSNVPGIHIPDGIIRRLEGAQDQKKEGKQLCIDVMNEVKEIEGVSGVHVMAYRQEEYVAEIVHESGVLR GRKPWKREAAPTDAMVAERLEHIREGREENQQQMAEAAAHHPHETKQ
Sequences:
>Translated_367_residues MSPDINPYDPGAPLDPLPGHSSRGRLERVLRRGEFAVTAELNPPDSANPHDVYERAAIFDGWVDGINAVDASGANCHMSS VGICALLTRMGYAPIMQIACRDRNRIAIQGDVLGASAMGVQNIMCLTGDGVQAGDQPGAKPVFDLDCMSLLETVRIMRDN SKFLSGRKLSTPPHVFLGAAINPFAPPYDFRPYRLAKKIEAGAQFVQSQYCFDVPMFREYMKKVRDLGLHEKCFILVGVG PLASAKTARWIRSNVPGIHIPDGIIRRLEGAQDQKKEGKQLCIDVMNEVKEIEGVSGVHVMAYRQEEYVAEIVHESGVLR GRKPWKREAAPTDAMVAERLEHIREGREENQQQMAEAAAHHPHETKQ >Mature_366_residues SPDINPYDPGAPLDPLPGHSSRGRLERVLRRGEFAVTAELNPPDSANPHDVYERAAIFDGWVDGINAVDASGANCHMSSV GICALLTRMGYAPIMQIACRDRNRIAIQGDVLGASAMGVQNIMCLTGDGVQAGDQPGAKPVFDLDCMSLLETVRIMRDNS KFLSGRKLSTPPHVFLGAAINPFAPPYDFRPYRLAKKIEAGAQFVQSQYCFDVPMFREYMKKVRDLGLHEKCFILVGVGP LASAKTARWIRSNVPGIHIPDGIIRRLEGAQDQKKEGKQLCIDVMNEVKEIEGVSGVHVMAYRQEEYVAEIVHESGVLRG RKPWKREAAPTDAMVAERLEHIREGREENQQQMAEAAAHHPHETKQ
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003171 - InterPro: IPR003726 [H]
Pfam domain/function: PF02219 MTHFR; PF02574 S-methyl_trans [H]
EC number: =2.1.1.10; =1.5.1.20 [H]
Molecular weight: Translated: 40573; Mature: 40442
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDINPYDPGAPLDPLPGHSSRGRLERVLRRGEFAVTAELNPPDSANPHDVYERAAIFD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH GWVDGINAVDASGANCHMSSVGICALLTRMGYAPIMQIACRDRNRIAIQGDVLGASAMGV HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCHHHCC QNIMCLTGDGVQAGDQPGAKPVFDLDCMSLLETVRIMRDNSKFLSGRKLSTPPHVFLGAA CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEECCC INPFAPPYDFRPYRLAKKIEAGAQFVQSQYCFDVPMFREYMKKVRDLGLHEKCFILVGVG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECC PLASAKTARWIRSNVPGIHIPDGIIRRLEGAQDQKKEGKQLCIDVMNEVKEIEGVSGVHV CCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE MAYRQEEYVAEIVHESGVLRGRKPWKREAAPTDAMVAERLEHIREGREENQQQMAEAAAH EEECHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPHETKQ CCCCCCC >Mature Secondary Structure SPDINPYDPGAPLDPLPGHSSRGRLERVLRRGEFAVTAELNPPDSANPHDVYERAAIFD CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH GWVDGINAVDASGANCHMSSVGICALLTRMGYAPIMQIACRDRNRIAIQGDVLGASAMGV HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCHHHCC QNIMCLTGDGVQAGDQPGAKPVFDLDCMSLLETVRIMRDNSKFLSGRKLSTPPHVFLGAA CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEECCC INPFAPPYDFRPYRLAKKIEAGAQFVQSQYCFDVPMFREYMKKVRDLGLHEKCFILVGVG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECC PLASAKTARWIRSNVPGIHIPDGIIRRLEGAQDQKKEGKQLCIDVMNEVKEIEGVSGVHV CCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE MAYRQEEYVAEIVHESGVLRGRKPWKREAAPTDAMVAERLEHIREGREENQQQMAEAAAH EEECHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPHETKQ CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353932; 9384377 [H]