| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is artJ [H]
Identifier: 150396797
GI number: 150396797
Start: 1686274
End: 1687056
Strand: Direct
Name: artJ [H]
Synonym: Smed_1588
Alternate gene names: 150396797
Gene position: 1686274-1687056 (Clockwise)
Preceding gene: 150396794
Following gene: 150396798
Centisome position: 44.59
GC content: 58.24
Gene sequence:
>783_bases ATGCTTATTTCCAAACGGCTTGCGGCCACCGCATCGGCTGCCGTTTTCGTGCTTATGACCGGCATCGCCATGGCGGACGG CGAGAAGGTGGTAATCGGCAGCGAAGGCGCTTATCCGCCCTTCAACAATCTCGAATCCGACGGCACGCTGACCGGCTTCG ACATCGACATCGCCAAGGCGCTTTGCGAAGAGATGAAAGCGGACTGTACTTTCGTCACACAGGAATGGGACGGAATGATT CCGGCGCTGATCGCCAAGAAATTCGATGCGATCGTCGCGTCGATGTCGATCACGGAAGAGCGCAAGCAACAGGTCGACTT TACCAACAAATACTACAACACGCCGCCGGCAATCGTCGTGCCGAAGGATTCACCGATTACCGAGGCAACCGCGGCCGGCC TTTCCGGCAAGGTGCTGGGCGCGCAAAGCTCCACCACCCATTCCAACTATGCGGAAGCGCATATGAAGGAGTCTGAGCTG AAGCTCTATCCAACCGCGGATGAATACAAGCTCGATCTTGCCAACGGCCGCATCGACGCGGCGATCGACGACGTCGTCGT GCTTTCGGAATGGCTGAAGACCGAGGACGGCGCCTGCTGCAAGCTGCTCGGCACCCTGCCCATCGATCCCGTCATCAATG GCGAGGGCGCCGGCATCGCAGTGCGCAAAGGCGATGACGCGCTGCGCGAAAAGCTCAACAAGGCCATCGAGGCCATCCGC GCGAATGGCAAGTACAAGCAAATCAACGAAAAGTACTTCCCCTTCGACGTCTACGGTAGCTAA
Upstream 100 bases:
>100_bases CCGTACGAATATCGCAGCAACCGGCGGCGCAAGCCCCGGCGCCAATTGGCATCCGCGAAACAAGAAAAACCGGATGCCGA AAGCCAACAGAGAGGACACA
Downstream 100 bases:
>100_bases TCGCAGCGTTCCCGCGGTATTTCGGCTTTGACGGCGGGATAACCTGTTTTGAAGAAGAAAATGCAACGGCGGATGGGCTT GCCCTCCCGCCGTTTTTGTT
Product: extracellular solute-binding protein
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MLISKRLAATASAAVFVLMTGIAMADGEKVVIGSEGAYPPFNNLESDGTLTGFDIDIAKALCEEMKADCTFVTQEWDGMI PALIAKKFDAIVASMSITEERKQQVDFTNKYYNTPPAIVVPKDSPITEATAAGLSGKVLGAQSSTTHSNYAEAHMKESEL KLYPTADEYKLDLANGRIDAAIDDVVVLSEWLKTEDGACCKLLGTLPIDPVINGEGAGIAVRKGDDALREKLNKAIEAIR ANGKYKQINEKYFPFDVYGS
Sequences:
>Translated_260_residues MLISKRLAATASAAVFVLMTGIAMADGEKVVIGSEGAYPPFNNLESDGTLTGFDIDIAKALCEEMKADCTFVTQEWDGMI PALIAKKFDAIVASMSITEERKQQVDFTNKYYNTPPAIVVPKDSPITEATAAGLSGKVLGAQSSTTHSNYAEAHMKESEL KLYPTADEYKLDLANGRIDAAIDDVVVLSEWLKTEDGACCKLLGTLPIDPVINGEGAGIAVRKGDDALREKLNKAIEAIR ANGKYKQINEKYFPFDVYGS >Mature_260_residues MLISKRLAATASAAVFVLMTGIAMADGEKVVIGSEGAYPPFNNLESDGTLTGFDIDIAKALCEEMKADCTFVTQEWDGMI PALIAKKFDAIVASMSITEERKQQVDFTNKYYNTPPAIVVPKDSPITEATAAGLSGKVLGAQSSTTHSNYAEAHMKESEL KLYPTADEYKLDLANGRIDAAIDDVVVLSEWLKTEDGACCKLLGTLPIDPVINGEGAGIAVRKGDDALREKLNKAIEAIR ANGKYKQINEKYFPFDVYGS
Specific function: Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Binds L-arginine with high affinity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=252, Percent_Identity=39.6825396825397, Blast_Score=186, Evalue=9e-49, Organism=Escherichia coli, GI1788648, Length=235, Percent_Identity=43.4042553191489, Blast_Score=178, Evalue=2e-46, Organism=Escherichia coli, GI1787088, Length=238, Percent_Identity=37.3949579831933, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1788649, Length=235, Percent_Identity=37.4468085106383, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1787031, Length=226, Percent_Identity=31.858407079646, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1788228, Length=230, Percent_Identity=30, Blast_Score=116, Evalue=1e-27,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR005768 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 28026; Mature: 28026
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISKRLAATASAAVFVLMTGIAMADGEKVVIGSEGAYPPFNNLESDGTLTGFDIDIAKA CCCCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHH LCEEMKADCTFVTQEWDGMIPALIAKKFDAIVASMSITEERKQQVDFTNKYYNTPPAIVV HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEE PKDSPITEATAAGLSGKVLGAQSSTTHSNYAEAHMKESELKLYPTADEYKLDLANGRIDA ECCCCCCHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCEEEEECCCEECH AIDDVVVLSEWLKTEDGACCKLLGTLPIDPVINGEGAGIAVRKGDDALREKLNKAIEAIR HHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHH ANGKYKQINEKYFPFDVYGS CCCCEEECCCCCCCEEECCC >Mature Secondary Structure MLISKRLAATASAAVFVLMTGIAMADGEKVVIGSEGAYPPFNNLESDGTLTGFDIDIAKA CCCCHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCCEEECHHHHHHH LCEEMKADCTFVTQEWDGMIPALIAKKFDAIVASMSITEERKQQVDFTNKYYNTPPAIVV HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEE PKDSPITEATAAGLSGKVLGAQSSTTHSNYAEAHMKESELKLYPTADEYKLDLANGRIDA ECCCCCCHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCEEEEECCCEECH AIDDVVVLSEWLKTEDGACCKLLGTLPIDPVINGEGAGIAVRKGDDALREKLNKAIEAIR HHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHH ANGKYKQINEKYFPFDVYGS CCCCEEECCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501075; 8905232; 9278503; 9298646; 9600841 [H]