Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 150396672

GI number: 150396672

Start: 1541230

End: 1542012

Strand: Direct

Name: radC [C]

Synonym: Smed_1459

Alternate gene names: 150396672

Gene position: 1541230-1542012 (Clockwise)

Preceding gene: 150396671

Following gene: 150396674

Centisome position: 40.75

GC content: 61.69

Gene sequence:

>783_bases
GTGACGAAGACACCGCCCGCCCCCGAACCCGACGTCCTTTTCGGCGCCACGGACGAACGTCAGTTTATCCCGCAGCAGCA
AACGCCCGCCGCCGCGCCGGCGCCCGCAGAGGATGCTCACTATCACGGCCATCGGGATCGCCTGCGGGCTCGCTACCGTG
AATACGGCGACGCGGCGCTGGCGGATTACGAAATTCTCGAACTCATTCTCTTCCGCCTCATCCCCCGCCGCGATACGAAG
CCGATCGCCAAGGCCCTGCTCGCCCGGTTCGGCACGCTCGCCGGCGTCTTCGGTGCCCCTTTGCACCTGCTTCACGAAGT
GAAGGGAGTTAAGGAATCCGTTGCGCTCGATCTAAAGCTCGTCGCCACCGCCAGTCATCGCATGCTCAAGAGCGAATTGC
GTAATAAGCAGGTTCTCTCCTCCTGGAGCGCCGTGATCGATTATTGCCATGCAGCGATGGCGCATGAGACGAAGGAGCAG
TTCCGCATCCTTTTTCTGGACAAACGCAACACGCTGATCGCCGACGAGGTGCAGCAGCAGGGAACAATCGACCACACGCC
CGTCTATCCTCGCGAGGTGGTCAAACGCGCACTGGAGCTTTCCGCCACTGCGTTGATCCTCGTCCACAACCATCCCTCCG
GCGACCCGACGCCGTCTTGCGCCGATATCGAGATGACGAAGCTCATCGCCGAGGCCGCCAAGCCGCTCGGCATTGCGCTT
CACGATCACGTCATCATCGGCAAGGACGGCCACGTCAGTCTCAAGGGGCTTCAATTGTTCTGA

Upstream 100 bases:

>100_bases
AATACGAGCACACGGTCGGCGTCACTGCCGAGGGCTGCGAAATATTCACGCTTTCACCGGCCGGCCTTTTCAAGCCCGGT
ATTCAGGTTCCGGGCGACGC

Downstream 100 bases:

>100_bases
TAATAGGTCGGTCGGTAGCAGGCGCATTCTGGACGCATCACTGCGGCATTTTCGGATCGTTCGACGACGGCTGCCCCGAG
CTTCCCGCGTCATTCCTGAT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTKTPPAPEPDVLFGATDERQFIPQQQTPAAAPAPAEDAHYHGHRDRLRARYREYGDAALADYEILELILFRLIPRRDTK
PIAKALLARFGTLAGVFGAPLHLLHEVKGVKESVALDLKLVATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHETKEQ
FRILFLDKRNTLIADEVQQQGTIDHTPVYPREVVKRALELSATALILVHNHPSGDPTPSCADIEMTKLIAEAAKPLGIAL
HDHVIIGKDGHVSLKGLQLF

Sequences:

>Translated_260_residues
MTKTPPAPEPDVLFGATDERQFIPQQQTPAAAPAPAEDAHYHGHRDRLRARYREYGDAALADYEILELILFRLIPRRDTK
PIAKALLARFGTLAGVFGAPLHLLHEVKGVKESVALDLKLVATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHETKEQ
FRILFLDKRNTLIADEVQQQGTIDHTPVYPREVVKRALELSATALILVHNHPSGDPTPSCADIEMTKLIAEAAKPLGIAL
HDHVIIGKDGHVSLKGLQLF
>Mature_259_residues
TKTPPAPEPDVLFGATDERQFIPQQQTPAAAPAPAEDAHYHGHRDRLRARYREYGDAALADYEILELILFRLIPRRDTKP
IAKALLARFGTLAGVFGAPLHLLHEVKGVKESVALDLKLVATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHETKEQF
RILFLDKRNTLIADEVQQQGTIDHTPVYPREVVKRALELSATALILVHNHPSGDPTPSCADIEMTKLIAEAAKPLGIALH
DHVIIGKDGHVSLKGLQLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=31.0679611650485, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI2367100, Length=109, Percent_Identity=46.7889908256881, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=44.6280991735537, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=43.2432432432432, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28795; Mature: 28663

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTPPAPEPDVLFGATDERQFIPQQQTPAAAPAPAEDAHYHGHRDRLRARYREYGDAAL
CCCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
ADYEILELILFRLIPRRDTKPIAKALLARFGTLAGVFGAPLHLLHEVKGVKESVALDLKL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHETKEQFRILFLDKRNTLIADEVQQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHC
GTIDHTPVYPREVVKRALELSATALILVHNHPSGDPTPSCADIEMTKLIAEAAKPLGIAL
CCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
HDHVIIGKDGHVSLKGLQLF
ECEEEECCCCCEEEECEECC
>Mature Secondary Structure 
TKTPPAPEPDVLFGATDERQFIPQQQTPAAAPAPAEDAHYHGHRDRLRARYREYGDAAL
CCCCCCCCCCEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
ADYEILELILFRLIPRRDTKPIAKALLARFGTLAGVFGAPLHLLHEVKGVKESVALDLKL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATASHRMLKSELRNKQVLSSWSAVIDYCHAAMAHETKEQFRILFLDKRNTLIADEVQQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHC
GTIDHTPVYPREVVKRALELSATALILVHNHPSGDPTPSCADIEMTKLIAEAAKPLGIAL
CCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
HDHVIIGKDGHVSLKGLQLF
ECEEEECCCCCEEEECEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]