| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yqjQ [H]
Identifier: 150396429
GI number: 150396429
Start: 1293918
End: 1294742
Strand: Direct
Name: yqjQ [H]
Synonym: Smed_1211
Alternate gene names: 150396429
Gene position: 1293918-1294742 (Clockwise)
Preceding gene: 150396428
Following gene: 150396430
Centisome position: 34.21
GC content: 61.09
Gene sequence:
>825_bases ATGAAGACCTGGTTCATAACCGGAGCGTCGCGCGGTTTTGGCGCCCGTATTGCGCAGCTTGCTCTCGAGCGCGGCGATAA TGTCGTCGCGACAGCGCGCAACGTGGTGCCGATAAAGGAAAATCTAGGCGATCGGCCGAACCTTCTTGCGGCGGCACTCG ACGTGGCGAACGAACAGCAAGCCCGAGATGCAGCTCGGCAGGCAGTCGAGCGATTCGGCTCCATTGATGTCCTGCTGAAC AATGCGGGCTTCGGCCTCATCGGGGCAGTCGAGGAGGCGACGGCCGAAGAGATTGAACGCCTCTATCGGACCAATGTGTT CGGTCTGCTGACCGTGACGCGAGCGGTGCTGCCGCAGATGCGGGCACAGCGATCAGGTCGGGTCCTGAACATCTCGTCGA TCGGCGGCTATCGTGCAGGCGCAGGCTTCGGTGTCTACTGCTCGACGAAGTTCGCTGTCGAAGGGCTGTCGGAGGCGCTC CATGCAGAACTGGCACCCCTCGGGATCCATGTGACCGTGATCGAGCCAGGATACTTCAGGACCGACTTCCTCGACTCCAG CTCGTTGTCGGTGAGCGGAAATCGCATAGCCGATTACGATAGCACGGCTGGAGCGGTCCGCGAGCACGCATCTGCCATGA ACCACAACCAGCCGGGTGATCCCGAGAAGTTCGCTCGACAGCTCGTCGCGTTCGCAGATGTCGCCGACCCACCAGTCAGG GTGCCATTCGGAAGCGATACTGTCGCGGCAATCGAGGCCAAGCACGCCTCGGACGCGGAAACAATCAGGAAATGGAGGCA GGTTTCACTCTCGACGGACTACTGA
Upstream 100 bases:
>100_bases CGTGAAGGCTTCGGCATTCTTCGACAGCATCGCATTCAACAAGCTCTGGGAGCTTCCGGCGGCTGGTGAGTAAACGCAGT CACTGCAAAAGGAGATCGAG
Downstream 100 bases:
>100_bases CACGTTGGAACGAGTGGTCAAGTCGTAAGCGCACGCCACGAGGCATGCGCGGCGGCAGACGAGATTGCACTTGGAGACAG CGAGGAAGCCTATCTGATCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MKTWFITGASRGFGARIAQLALERGDNVVATARNVVPIKENLGDRPNLLAAALDVANEQQARDAARQAVERFGSIDVLLN NAGFGLIGAVEEATAEEIERLYRTNVFGLLTVTRAVLPQMRAQRSGRVLNISSIGGYRAGAGFGVYCSTKFAVEGLSEAL HAELAPLGIHVTVIEPGYFRTDFLDSSSLSVSGNRIADYDSTAGAVREHASAMNHNQPGDPEKFARQLVAFADVADPPVR VPFGSDTVAAIEAKHASDAETIRKWRQVSLSTDY
Sequences:
>Translated_274_residues MKTWFITGASRGFGARIAQLALERGDNVVATARNVVPIKENLGDRPNLLAAALDVANEQQARDAARQAVERFGSIDVLLN NAGFGLIGAVEEATAEEIERLYRTNVFGLLTVTRAVLPQMRAQRSGRVLNISSIGGYRAGAGFGVYCSTKFAVEGLSEAL HAELAPLGIHVTVIEPGYFRTDFLDSSSLSVSGNRIADYDSTAGAVREHASAMNHNQPGDPEKFARQLVAFADVADPPVR VPFGSDTVAAIEAKHASDAETIRKWRQVSLSTDY >Mature_274_residues MKTWFITGASRGFGARIAQLALERGDNVVATARNVVPIKENLGDRPNLLAAALDVANEQQARDAARQAVERFGSIDVLLN NAGFGLIGAVEEATAEEIERLYRTNVFGLLTVTRAVLPQMRAQRSGRVLNISSIGGYRAGAGFGVYCSTKFAVEGLSEAL HAELAPLGIHVTVIEPGYFRTDFLDSSSLSVSGNRIADYDSTAGAVREHASAMNHNQPGDPEKFARQLVAFADVADPPVR VPFGSDTVAAIEAKHASDAETIRKWRQVSLSTDY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4503817, Length=180, Percent_Identity=32.7777777777778, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI40548397, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI214010158, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI214010156, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI22758144, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=30.622009569378, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI22507405, Length=191, Percent_Identity=36.1256544502618, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=34.375, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=34.7150259067358, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI150247226, Length=183, Percent_Identity=36.6120218579235, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=31.1475409836066, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19743808, Length=183, Percent_Identity=34.4262295081967, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI50726952, Length=192, Percent_Identity=35.9375, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI44680136, Length=102, Percent_Identity=42.156862745098, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI44680133, Length=102, Percent_Identity=42.156862745098, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI17738292, Length=102, Percent_Identity=42.156862745098, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=27.979274611399, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI32483357, Length=187, Percent_Identity=28.3422459893048, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=26.984126984127, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=28.5, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=26.1780104712042, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=26.8041237113402, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7705925, Length=180, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI59889578, Length=161, Percent_Identity=31.6770186335404, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40254986, Length=166, Percent_Identity=29.5180722891566, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI66933014, Length=164, Percent_Identity=34.1463414634146, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI5031737, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=28.1914893617021, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=167, Percent_Identity=29.3413173652695, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4758504, Length=152, Percent_Identity=28.2894736842105, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4504503, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19923817, Length=183, Percent_Identity=25.1366120218579, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=37.2881355932203, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=32.2033898305085, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=32.8042328042328, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=32.967032967033, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=31.3513513513514, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082160, Length=204, Percent_Identity=27.4509803921569, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=28.3422459893048, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=202, Percent_Identity=29.7029702970297, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786812, Length=182, Percent_Identity=24.7252747252747, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789378, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787905, Length=191, Percent_Identity=30.8900523560209, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994604, Length=242, Percent_Identity=30.9917355371901, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=31.9371727748691, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17507613, Length=192, Percent_Identity=29.6875, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI32563809, Length=196, Percent_Identity=29.0816326530612, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17557780, Length=206, Percent_Identity=28.6407766990291, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17562910, Length=247, Percent_Identity=27.1255060728745, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=30.9278350515464, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71997402, Length=222, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=25.9067357512953, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567345, Length=135, Percent_Identity=28.8888888888889, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=28.1746031746032, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=29.4736842105263, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17570069, Length=218, Percent_Identity=29.3577981651376, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193210355, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534660, Length=190, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17561402, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=27.0408163265306, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17551412, Length=244, Percent_Identity=27.0491803278689, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=31.7708333333333, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17559104, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17560676, Length=188, Percent_Identity=27.6595744680851, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534694, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560150, Length=246, Percent_Identity=24.7967479674797, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565030, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=25.5102040816327, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=26.2096774193548, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17538480, Length=248, Percent_Identity=26.6129032258064, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=35.7512953367876, Blast_Score=98, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322861, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=233, Percent_Identity=24.4635193133047, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=186, Percent_Identity=34.4086021505376, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=31.9148936170213, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI281364892, Length=168, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24641232, Length=226, Percent_Identity=29.646017699115, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358495, Length=211, Percent_Identity=28.436018957346, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21356301, Length=180, Percent_Identity=28.8888888888889, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=28.8770053475936, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI28571387, Length=227, Percent_Identity=30.8370044052863, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=28.4153005464481, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24648944, Length=202, Percent_Identity=32.6732673267327, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=29.6875, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641388, Length=209, Percent_Identity=29.6650717703349, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355631, Length=168, Percent_Identity=26.1904761904762, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581726, Length=138, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364494, Length=204, Percent_Identity=30.3921568627451, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24640492, Length=170, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221510726, Length=131, Percent_Identity=31.2977099236641, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007236, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648693, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI21355889, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29416; Mature: 29416
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTWFITGASRGFGARIAQLALERGDNVVATARNVVPIKENLGDRPNLLAAALDVANEQQ CCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCEEEHHHCCCCCCHHHHHHHHHHCHHH ARDAARQAVERFGSIDVLLNNAGFGLIGAVEEATAEEIERLYRTNVFGLLTVTRAVLPQM HHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH RAQRSGRVLNISSIGGYRAGAGFGVYCSTKFAVEGLSEALHAELAPLGIHVTVIEPGYFR HHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEE TDFLDSSSLSVSGNRIADYDSTAGAVREHASAMNHNQPGDPEKFARQLVAFADVADPPVR ECCCCCCCCEECCCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE VPFGSDTVAAIEAKHASDAETIRKWRQVSLSTDY CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MKTWFITGASRGFGARIAQLALERGDNVVATARNVVPIKENLGDRPNLLAAALDVANEQQ CCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCEEEHHHCCCCCCHHHHHHHHHHCHHH ARDAARQAVERFGSIDVLLNNAGFGLIGAVEEATAEEIERLYRTNVFGLLTVTRAVLPQM HHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH RAQRSGRVLNISSIGGYRAGAGFGVYCSTKFAVEGLSEALHAELAPLGIHVTVIEPGYFR HHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEE TDFLDSSSLSVSGNRIADYDSTAGAVREHASAMNHNQPGDPEKFARQLVAFADVADPPVR ECCCCCCCCEECCCEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEE VPFGSDTVAAIEAKHASDAETIRKWRQVSLSTDY CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]