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The map label for this gene is ygeR [C]

Identifier: 150396390

GI number: 150396390

Start: 1247627

End: 1249156

Strand: Direct

Name: ygeR [C]

Synonym: Smed_1171

Alternate gene names: 150396390

Gene position: 1247627-1249156 (Clockwise)

Preceding gene: 150396389

Following gene: 150396392

Centisome position: 32.99

GC content: 63.99

Gene sequence:

>1530_bases
ATGCGTAAATTTGAATCTCCCCAGGCAGGCAAGTCTATGATCCGTCTCTGCGCGGCTATATTGCTTGCGGGTGTAGCGAC
CGGTTGCAGTTCTGACGCCAGCCGCTTCGGCGGGCTCTTCTCGCGGTCTGACGACATAATGACAGGCTCGATCCCGCAGG
GTTCGAGTACGATGCCGAGAGGCGATGTCGCAAGTGGCGATGCAGCGCCCTCCTATGGAAACAGCGCGTCGGTCGGTCAA
TCCTATCCCGCTGGCGGCGGCTACAATGCGGCAGCGGCGCCGGTCTCCAGTGCTCGTGTCGCATCCACGCCTATGGCCGT
CCAGCGTACGAGCCTCGACGAGCCGTCCGCCACATCCGGGCAGCAGCAGGTTCGGACCGCTTCTCTCGACTCGCAGGCCG
CCGCCCTTCCGAGGTCGCAGCCGCAGTCGGGGGGCGCCAGGGATATTCCGAGCAAGGGGGGGTGGAGTGCCTCCAACGCG
CCGACGATCTTGGTCCGTCAGGGCGACACGGTGACCGTTCTCGCCAGACGGTTCGGCGTCCCCGAGAAGGAGATCCTGAG
GGCGAACGGATTGAAATCGTCAAGCCAGGTAGAGCCGGGCCAGCGCCTGGTCATTCCGACGTTTGGCGCCGCGGGCAGCG
CCGCGAAGGCGGCTGCATCGGGGTCGATCGCCGACGTGGAAGGTGGTAAGAGGCGCCCGTCGCCGCTGCCGACTGATCAG
CGCGAGGTCGCAATCCTCCCCGGTCAGTCCCAATCTCGCGAAAAGAACGAAAGCCGCAGCGATGTGGCCGCAGGCAAGCT
CAACAGCGCTGGCGAGGGCGGCGGCACTGGCGGTTATGCGGTCAAGCCGGGCGACTCGCTGAACCGGATCGCCAAGGCGA
ACGGTGTCTCGGTCGCTGCTCTGAAGCAGGCAAACGGGCTTACGACGGAAGCCATCCGCATCGGACAAAAACTCAATATC
CCCAGCGCTTCGGCCAATACGCCAGCGACCGACGCTGTCGTCACGGCTTCTGTCTCGCCCAAGAAGAACGAAGCCAAGGT
TGCCGCAACGGAGCAGTCCAAGCCGGCCGAAGCCAAGGCGGCTGCCGCCAAGGAGAGCGTGTCCGAAGTCGCCATCAAGT
CGGATGTCAACGAAGATCTCCCGAAGTCGACCGGCATCGGGAAATACCGCTGGCCGGTCCGTGGCGCGGTCGTCGCTGCC
TATGGCGCCAATGTCGATGGCAACCGGAATGACGGTATCAACATATCGGTTCCGGAGGGTACGCCTATCAAGGCGGCTGA
GAACGGCGTCGTGATCTACTCGGGCAGCAGCCTCAAGGAGCTCGGCAATGCCGTTCTGGTGCGCCACGATGACGGTACCG
TAACGGTCTACGGCAATGCTGCCGAACTGAAGGTGCAACGCGGTCAGAAGGTCCAGCGCGGGCAGACGCTCGCATCATCA
GGCATGACGGGCAGGGCATCGCGGCCGCAGGTGCACTTCGAGGTGCGCAAGAATGCGACCCCGGTCAACCCGGTGACCTA
TCTCGAATAG

Upstream 100 bases:

>100_bases
GTTAGCATTTCGCCAAAATCGTGCCGCCCTTAACCGGGCGGTAACTCTAATGCGCTTTAATCATTCTACAGCGAGTTGCG
TTCGGAGTGGGTAAAGCGTC

Downstream 100 bases:

>100_bases
GTATAGCAGGCGCGTATCCCGAACCGTACGGGACTTAAGAGCAAACACGAGACGATCGAAAACGCCGCGCGGCTGACAGG
CCGCGCGGCGTTTTCGATCG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MRKFESPQAGKSMIRLCAAILLAGVATGCSSDASRFGGLFSRSDDIMTGSIPQGSSTMPRGDVASGDAAPSYGNSASVGQ
SYPAGGGYNAAAAPVSSARVASTPMAVQRTSLDEPSATSGQQQVRTASLDSQAAALPRSQPQSGGARDIPSKGGWSASNA
PTILVRQGDTVTVLARRFGVPEKEILRANGLKSSSQVEPGQRLVIPTFGAAGSAAKAAASGSIADVEGGKRRPSPLPTDQ
REVAILPGQSQSREKNESRSDVAAGKLNSAGEGGGTGGYAVKPGDSLNRIAKANGVSVAALKQANGLTTEAIRIGQKLNI
PSASANTPATDAVVTASVSPKKNEAKVAATEQSKPAEAKAAAAKESVSEVAIKSDVNEDLPKSTGIGKYRWPVRGAVVAA
YGANVDGNRNDGINISVPEGTPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASS
GMTGRASRPQVHFEVRKNATPVNPVTYLE

Sequences:

>Translated_509_residues
MRKFESPQAGKSMIRLCAAILLAGVATGCSSDASRFGGLFSRSDDIMTGSIPQGSSTMPRGDVASGDAAPSYGNSASVGQ
SYPAGGGYNAAAAPVSSARVASTPMAVQRTSLDEPSATSGQQQVRTASLDSQAAALPRSQPQSGGARDIPSKGGWSASNA
PTILVRQGDTVTVLARRFGVPEKEILRANGLKSSSQVEPGQRLVIPTFGAAGSAAKAAASGSIADVEGGKRRPSPLPTDQ
REVAILPGQSQSREKNESRSDVAAGKLNSAGEGGGTGGYAVKPGDSLNRIAKANGVSVAALKQANGLTTEAIRIGQKLNI
PSASANTPATDAVVTASVSPKKNEAKVAATEQSKPAEAKAAAAKESVSEVAIKSDVNEDLPKSTGIGKYRWPVRGAVVAA
YGANVDGNRNDGINISVPEGTPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASS
GMTGRASRPQVHFEVRKNATPVNPVTYLE
>Mature_509_residues
MRKFESPQAGKSMIRLCAAILLAGVATGCSSDASRFGGLFSRSDDIMTGSIPQGSSTMPRGDVASGDAAPSYGNSASVGQ
SYPAGGGYNAAAAPVSSARVASTPMAVQRTSLDEPSATSGQQQVRTASLDSQAAALPRSQPQSGGARDIPSKGGWSASNA
PTILVRQGDTVTVLARRFGVPEKEILRANGLKSSSQVEPGQRLVIPTFGAAGSAAKAAASGSIADVEGGKRRPSPLPTDQ
REVAILPGQSQSREKNESRSDVAAGKLNSAGEGGGTGGYAVKPGDSLNRIAKANGVSVAALKQANGLTTEAIRIGQKLNI
PSASANTPATDAVVTASVSPKKNEAKVAATEQSKPAEAKAAAAKESVSEVAIKSDVNEDLPKSTGIGKYRWPVRGAVVAA
YGANVDGNRNDGINISVPEGTPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASS
GMTGRASRPQVHFEVRKNATPVNPVTYLE

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=235, Percent_Identity=32.7659574468085, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1789099, Length=262, Percent_Identity=29.7709923664122, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082297, Length=123, Percent_Identity=36.5853658536585, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=37.8947368421053, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 51883; Mature: 51883

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFESPQAGKSMIRLCAAILLAGVATGCSSDASRFGGLFSRSDDIMTGSIPQGSSTMPR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCC
GDVASGDAAPSYGNSASVGQSYPAGGGYNAAAAPVSSARVASTPMAVQRTSLDEPSATSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCC
QQQVRTASLDSQAAALPRSQPQSGGARDIPSKGGWSASNAPTILVRQGDTVTVLARRFGV
HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHCC
PEKEILRANGLKSSSQVEPGQRLVIPTFGAAGSAAKAAASGSIADVEGGKRRPSPLPTDQ
CHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCC
REVAILPGQSQSREKNESRSDVAAGKLNSAGEGGGTGGYAVKPGDSLNRIAKANGVSVAA
CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEE
LKQANGLTTEAIRIGQKLNIPSASANTPATDAVVTASVSPKKNEAKVAATEQSKPAEAKA
ECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHH
AAAKESVSEVAIKSDVNEDLPKSTGIGKYRWPVRGAVVAAYGANVDGNRNDGINISVPEG
HHHHHHHHHHHHHHCCCHHCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCC
TPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASS
CCCEECCCCEEEECCCCHHHCCCEEEEEECCCEEEEECCHHEEEECCCCHHHHCCHHHHC
GMTGRASRPQVHFEVRKNATPVNPVTYLE
CCCCCCCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRKFESPQAGKSMIRLCAAILLAGVATGCSSDASRFGGLFSRSDDIMTGSIPQGSSTMPR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCC
GDVASGDAAPSYGNSASVGQSYPAGGGYNAAAAPVSSARVASTPMAVQRTSLDEPSATSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCC
QQQVRTASLDSQAAALPRSQPQSGGARDIPSKGGWSASNAPTILVRQGDTVTVLARRFGV
HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHCC
PEKEILRANGLKSSSQVEPGQRLVIPTFGAAGSAAKAAASGSIADVEGGKRRPSPLPTDQ
CHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCC
REVAILPGQSQSREKNESRSDVAAGKLNSAGEGGGTGGYAVKPGDSLNRIAKANGVSVAA
CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEE
LKQANGLTTEAIRIGQKLNIPSASANTPATDAVVTASVSPKKNEAKVAATEQSKPAEAKA
ECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCHHHH
AAAKESVSEVAIKSDVNEDLPKSTGIGKYRWPVRGAVVAAYGANVDGNRNDGINISVPEG
HHHHHHHHHHHHHHCCCHHCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEECCCC
TPIKAAENGVVIYSGSSLKELGNAVLVRHDDGTVTVYGNAAELKVQRGQKVQRGQTLASS
CCCEECCCCEEEECCCCHHHCCCEEEEEECCCEEEEECCHHEEEECCCCHHHHCCHHHHC
GMTGRASRPQVHFEVRKNATPVNPVTYLE
CCCCCCCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]