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The map label for this gene is omp85 [H]

Identifier: 150396357

GI number: 150396357

Start: 1206223

End: 1208556

Strand: Direct

Name: omp85 [H]

Synonym: Smed_1138

Alternate gene names: 150396357

Gene position: 1206223-1208556 (Clockwise)

Preceding gene: 150396356

Following gene: 150396358

Centisome position: 31.89

GC content: 59.51

Gene sequence:

>2334_bases
ATGAAAGCTGGTTCAAGGTTTTTGAACGCGGTGTCGGCGTTTGCGCTGTCAGCAAGCATGGTCGCCACGGGTACCGGGGT
TGGGCTTGTTGCCAGCACCTCAGTCGCGCAGGCCGCGGTCATCAATCGTGTTGAGGTGCGCGGTGCGACGCGGGTCAGCG
CGGAAACCGTTCGCGCGAACATCACCATCGTACCCGGCAAGAGCTTCAGCAATGCCGACATCGACGCATCCGTGAAGCGC
CTCTATGCGACCGGCTATTTCTCCGATGTCAGCATTACGGTTTCCGGAGGATCGCTTGTCGTCTCCGTCAGTGAGAACCA
GCTCGTCAATCAGGTCGTCTTCAACGGCAACCGCAAGATCAAGGACGATAAGCTCCAGGGTATCGTCCGGACCCAGCCGC
TCGGCCCCTATAGCGAAGCTACCGTCGAAACCGACATTCAGGCTATCCGGGACGCTTATTCGGCCATCGGCCGCAGCGAT
GTAACGGTGACGACCCAGGTCGTTCCGATTGCCGAAGGGCGCGTCAATCTTGCCTTCGTCATCAACGAAGGCGAGCGCAC
GAAGATCACCCAGATCAATTTCGTAGGTAACGAGGCCTATAGCGACGGCCGCCTGCAGTCGGTAATCGCGACCAAGGAAT
CGGGCATCTTCTCGTTCCTTACGCGCAAGGACGTCTACAATCCGGACAAGCTGCGGGCCGACGAGGAATTGCTGCGCCAG
TTCTACTACAATCGCGGCTTCGCGGATTTCCAGGTCGTCTCGTCCGAGGCTGCGCTCAACGAGGCAACCAACGAATACAC
GGTCACGATTACGGTCGAGGAAGGTCCTCGCTATGACTTCGGTCCGGTCAATATCGAATCGACTGTTGAAGGCGTCGATG
CCGAAGAGTTGAGGGGACTTGTTCAGAGCCACGAAGGCTCGGTGTATAAGGCCAAGGACATTCAGAGCACGATGAGCGAG
ATTTCGAAGCGCGTCGCGTCGGAGGGCTATCCCTTTGCCCGCGTCACGCCGCGCGGCAACCGCGATCTCGCCAATCACAC
GATTGCCGTCGATTATCTCGTGGATCAGGGCGAGCGGGCCTATGTCGAGCGCATCGAGATACGCGGCAACACGCGCACGC
GTGATTACGTCATCCGGCGCGAATTCGATGTCGGCGAGGGCGACGCCTTCAACCAGGAAATGGTCGCGCGCGCCAAGCGT
CGCCTGGAAGCGCTCGGCTATTTCTCGTCGGTGAACATTTCGACGACGCCCGGCAGTGCAGCTGACCGTGTCATCATCGT
CGTCGATGTGCAGGATCAGTCGACCGGTTCGTTCGGCATCGGCGCCGGCTATTCCGCCGGCGACGGCGGCGGCTTCCTCG
TTGAGGCTTCGATCGAGGAGAAGAACTTCCTTGGTCGCGGCCAGTATATCCGACTTGCCGCCGGTAAGGGCGAAGACAGC
CAGACCTACAATGTTTCGTTCACCGAGCCCTATTTCCTCGGCTATCGCCTCGCGGCGGGCTTCGATCTCTTCAAGAACGA
AAACGACTTCGACGACGACAATTACAGCTACAATGATCAGGGCTTCAGCCTGCGCGTGACGGCGCCGATCACTGAAAACC
TTTCGACAACGCTGCGTTACAACTATACGGAGCTGGAATATTTCGGCGACACGGACGAACTCTCGTCGCCTTATGACCGT
GTCGTGGACGGTGGCACCTGGACACGTTCGTCCATCTCGCAGTCGATCACCTACAACACGCTGGACGATGCGCAGCTGCC
GCATGAGGGCATTCTCGCCTCGGTGACGCAGGAATTTGCCGGCCTCGGCGGCACGTCGGACTTCTACAAGCTGACCGGTA
AGGCCAAATGGTACTACACGCTGCACGACGAGGCCGACATTATCGGATCGCTCGCCGGTAGCGCCGGCCACCTGTTCAAA
ACATCCGGTACGCTGGAGGTTTTCGATCAGTTCCAGCTGGGCAGCAACGATATTCGCGGCTTCGAGCGCAACGGCGTAGG
CCCGCGTGTCAACAATGGCGACGCTTTGGGCGGCACGACCTATTTCACGGCATCTGCGGAAGCGACGTTCCCGCTGCCGG
GTCTTCCGCGTGACAGCGGCTTCCGCGGCGCGCTCTTTGTCGACGCAGGCACCCTCTATGACAACGATCTGGAGCTGACC
GGTCCGGGTGAATCAGTCCGCGGGAACGACGCCTCGCTGCGTGCCTCCGTGGGTGTCAGCTTGATCTGGGCTTCGCCCTT
CGGTCCGTTGCGTGTCGACTACGCGGTGCCGGTTGCAAAGGAAGACTTCGACGAAATTCAGAACTTCAAGTTCGGAATCA
ACTCGTCGTTCTGA

Upstream 100 bases:

>100_bases
GAGCTGACTTGCTTGTATGGGAAAAGCGGTTAAAACGGCAACCGTGACCGGAGTCGGCACGAAATTGCCGCGGGACGTTG
GGAAAAGGTAAGATTTTGAC

Downstream 100 bases:

>100_bases
TAAGAGCAGTCCAGAACTGCCAGAAAATCGTTCTGGAGTGTCCATGGAAAAGAATTGGTTTTTCCCGCCCCATGACGGGA
TTCGTTTGGGCGACCTTGCG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MKAGSRFLNAVSAFALSASMVATGTGVGLVASTSVAQAAVINRVEVRGATRVSAETVRANITIVPGKSFSNADIDASVKR
LYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGIVRTQPLGPYSEATVETDIQAIRDAYSAIGRSD
VTVTTQVVPIAEGRVNLAFVINEGERTKITQINFVGNEAYSDGRLQSVIATKESGIFSFLTRKDVYNPDKLRADEELLRQ
FYYNRGFADFQVVSSEAALNEATNEYTVTITVEEGPRYDFGPVNIESTVEGVDAEELRGLVQSHEGSVYKAKDIQSTMSE
ISKRVASEGYPFARVTPRGNRDLANHTIAVDYLVDQGERAYVERIEIRGNTRTRDYVIRREFDVGEGDAFNQEMVARAKR
RLEALGYFSSVNISTTPGSAADRVIIVVDVQDQSTGSFGIGAGYSAGDGGGFLVEASIEEKNFLGRGQYIRLAAGKGEDS
QTYNVSFTEPYFLGYRLAAGFDLFKNENDFDDDNYSYNDQGFSLRVTAPITENLSTTLRYNYTELEYFGDTDELSSPYDR
VVDGGTWTRSSISQSITYNTLDDAQLPHEGILASVTQEFAGLGGTSDFYKLTGKAKWYYTLHDEADIIGSLAGSAGHLFK
TSGTLEVFDQFQLGSNDIRGFERNGVGPRVNNGDALGGTTYFTASAEATFPLPGLPRDSGFRGALFVDAGTLYDNDLELT
GPGESVRGNDASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEIQNFKFGINSSF

Sequences:

>Translated_777_residues
MKAGSRFLNAVSAFALSASMVATGTGVGLVASTSVAQAAVINRVEVRGATRVSAETVRANITIVPGKSFSNADIDASVKR
LYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGIVRTQPLGPYSEATVETDIQAIRDAYSAIGRSD
VTVTTQVVPIAEGRVNLAFVINEGERTKITQINFVGNEAYSDGRLQSVIATKESGIFSFLTRKDVYNPDKLRADEELLRQ
FYYNRGFADFQVVSSEAALNEATNEYTVTITVEEGPRYDFGPVNIESTVEGVDAEELRGLVQSHEGSVYKAKDIQSTMSE
ISKRVASEGYPFARVTPRGNRDLANHTIAVDYLVDQGERAYVERIEIRGNTRTRDYVIRREFDVGEGDAFNQEMVARAKR
RLEALGYFSSVNISTTPGSAADRVIIVVDVQDQSTGSFGIGAGYSAGDGGGFLVEASIEEKNFLGRGQYIRLAAGKGEDS
QTYNVSFTEPYFLGYRLAAGFDLFKNENDFDDDNYSYNDQGFSLRVTAPITENLSTTLRYNYTELEYFGDTDELSSPYDR
VVDGGTWTRSSISQSITYNTLDDAQLPHEGILASVTQEFAGLGGTSDFYKLTGKAKWYYTLHDEADIIGSLAGSAGHLFK
TSGTLEVFDQFQLGSNDIRGFERNGVGPRVNNGDALGGTTYFTASAEATFPLPGLPRDSGFRGALFVDAGTLYDNDLELT
GPGESVRGNDASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEIQNFKFGINSSF
>Mature_777_residues
MKAGSRFLNAVSAFALSASMVATGTGVGLVASTSVAQAAVINRVEVRGATRVSAETVRANITIVPGKSFSNADIDASVKR
LYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGIVRTQPLGPYSEATVETDIQAIRDAYSAIGRSD
VTVTTQVVPIAEGRVNLAFVINEGERTKITQINFVGNEAYSDGRLQSVIATKESGIFSFLTRKDVYNPDKLRADEELLRQ
FYYNRGFADFQVVSSEAALNEATNEYTVTITVEEGPRYDFGPVNIESTVEGVDAEELRGLVQSHEGSVYKAKDIQSTMSE
ISKRVASEGYPFARVTPRGNRDLANHTIAVDYLVDQGERAYVERIEIRGNTRTRDYVIRREFDVGEGDAFNQEMVARAKR
RLEALGYFSSVNISTTPGSAADRVIIVVDVQDQSTGSFGIGAGYSAGDGGGFLVEASIEEKNFLGRGQYIRLAAGKGEDS
QTYNVSFTEPYFLGYRLAAGFDLFKNENDFDDDNYSYNDQGFSLRVTAPITENLSTTLRYNYTELEYFGDTDELSSPYDR
VVDGGTWTRSSISQSITYNTLDDAQLPHEGILASVTQEFAGLGGTSDFYKLTGKAKWYYTLHDEADIIGSLAGSAGHLFK
TSGTLEVFDQFQLGSNDIRGFERNGVGPRVNNGDALGGTTYFTASAEATFPLPGLPRDSGFRGALFVDAGTLYDNDLELT
GPGESVRGNDASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEIQNFKFGINSSF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Homo sapiens, GI225543166, Length=436, Percent_Identity=25.2293577981651, Blast_Score=87, Evalue=6e-17,
Organism=Escherichia coli, GI1786374, Length=806, Percent_Identity=28.4119106699752, Blast_Score=285, Evalue=6e-78,
Organism=Escherichia coli, GI1790666, Length=464, Percent_Identity=25.2155172413793, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 84449; Mature: 84449

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGSRFLNAVSAFALSASMVATGTGVGLVASTSVAQAAVINRVEVRGATRVSAETVRAN
CCCHHHHHHHHHHHHHHHHHEECCCCCCEEEECHHHHHHHHHHEEECCCCEEEEEEEEEE
ITIVPGKSFSNADIDASVKRLYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKI
EEEECCCCCCCCCCCHHHHHHEEECEECEEEEEEECCEEEEEECCCHHHHHHHCCCCCEE
KDDKLQGIVRTQPLGPYSEATVETDIQAIRDAYSAIGRSDVTVTTQVVPIAEGRVNLAFV
CHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEE
INEGERTKITQINFVGNEAYSDGRLQSVIATKESGIFSFLTRKDVYNPDKLRADEELLRQ
ECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHCCCCHHHCCCHHHHHHH
FYYNRGFADFQVVSSEAALNEATNEYTVTITVEEGPRYDFGPVNIESTVEGVDAEELRGL
HHHCCCCCCEEEECCHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHH
VQSHEGSVYKAKDIQSTMSEISKRVASEGYPFARVTPRGNRDLANHTIAVDYLVDQGERA
HHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCEE
YVERIEIRGNTRTRDYVIRREFDVGEGDAFNQEMVARAKRRLEALGYFSSVNISTTPGSA
EEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCC
ADRVIIVVDVQDQSTGSFGIGAGYSAGDGGGFLVEASIEEKNFLGRGQYIRLAAGKGEDS
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCC
QTYNVSFTEPYFLGYRLAAGFDLFKNENDFDDDNYSYNDQGFSLRVTAPITENLSTTLRY
CEEEEEECCCHHEEEEEECCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE
NYTELEYFGDTDELSSPYDRVVDGGTWTRSSISQSITYNTLDDAQLPHEGILASVTQEFA
CEEEEEEECCCHHHCCCHHHHCCCCCCCHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHH
GLGGTSDFYKLTGKAKWYYTLHDEADIIGSLAGSAGHLFKTSGTLEVFDQFQLGSNDIRG
CCCCCCCCEEEECCEEEEEEECCCHHHHHHHCCCCCCEEECCCCCEEHEECCCCCCCCCC
FERNGVGPRVNNGDALGGTTYFTASAEATFPLPGLPRDSGFRGALFVDAGTLYDNDLELT
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEECCCEEEE
GPGESVRGNDASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEIQNFKFGINSSF
CCCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEECCCCHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MKAGSRFLNAVSAFALSASMVATGTGVGLVASTSVAQAAVINRVEVRGATRVSAETVRAN
CCCHHHHHHHHHHHHHHHHHEECCCCCCEEEECHHHHHHHHHHEEECCCCEEEEEEEEEE
ITIVPGKSFSNADIDASVKRLYATGYFSDVSITVSGGSLVVSVSENQLVNQVVFNGNRKI
EEEECCCCCCCCCCCHHHHHHEEECEECEEEEEEECCEEEEEECCCHHHHHHHCCCCCEE
KDDKLQGIVRTQPLGPYSEATVETDIQAIRDAYSAIGRSDVTVTTQVVPIAEGRVNLAFV
CHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEE
INEGERTKITQINFVGNEAYSDGRLQSVIATKESGIFSFLTRKDVYNPDKLRADEELLRQ
ECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEHHHHCCCCHHHCCCHHHHHHH
FYYNRGFADFQVVSSEAALNEATNEYTVTITVEEGPRYDFGPVNIESTVEGVDAEELRGL
HHHCCCCCCEEEECCHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHH
VQSHEGSVYKAKDIQSTMSEISKRVASEGYPFARVTPRGNRDLANHTIAVDYLVDQGERA
HHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCEE
YVERIEIRGNTRTRDYVIRREFDVGEGDAFNQEMVARAKRRLEALGYFSSVNISTTPGSA
EEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCC
ADRVIIVVDVQDQSTGSFGIGAGYSAGDGGGFLVEASIEEKNFLGRGQYIRLAAGKGEDS
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCC
QTYNVSFTEPYFLGYRLAAGFDLFKNENDFDDDNYSYNDQGFSLRVTAPITENLSTTLRY
CEEEEEECCCHHEEEEEECCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE
NYTELEYFGDTDELSSPYDRVVDGGTWTRSSISQSITYNTLDDAQLPHEGILASVTQEFA
CEEEEEEECCCHHHCCCHHHHCCCCCCCHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHH
GLGGTSDFYKLTGKAKWYYTLHDEADIIGSLAGSAGHLFKTSGTLEVFDQFQLGSNDIRG
CCCCCCCCEEEECCEEEEEEECCCHHHHHHHCCCCCCEEECCCCCEEHEECCCCCCCCCC
FERNGVGPRVNNGDALGGTTYFTASAEATFPLPGLPRDSGFRGALFVDAGTLYDNDLELT
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEECCCEEEE
GPGESVRGNDASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEIQNFKFGINSSF
CCCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEECCCCHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]