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The map label for this gene is ycjP [H]

Identifier: 150395415

GI number: 150395415

Start: 207441

End: 208274

Strand: Direct

Name: ycjP [H]

Synonym: Smed_0188

Alternate gene names: 150395415

Gene position: 207441-208274 (Clockwise)

Preceding gene: 150395414

Following gene: 150395416

Centisome position: 5.49

GC content: 62.95

Gene sequence:

>834_bases
ATGAACAGACCGTCCACGCTCCGTCGTATCCTCACTACCGACCTCCCGGTACTGCTGATCGTGCTCTTCGCCATGGCGCC
CTTCGCCTGGATGGTGCTGACCTCGCTGACGCCGACAGCGGCGCTGAACGCGACAGGCGTTTCCGTCTCGCCTTCCGGCT
GGAGCCTCGACAATTACGCGCGCCTGCTGCAGCAGACCTCGTTTCTCGGCAACATGCTCGACAGCCTCATTATCGCCTGC
GGCACGGTGGTGCTCGGCCTTGCCGTGGCGGTGACGGCCGCCTACGCCTTCTCGCGCTTCCGCTTCGCCGGACGCAAGCT
CCTGATGCTGCAGTTCCTGCTCATCAACATGTTTCCGATCGTGCTGCTGATCCTGCCTCTGTTCGTGCTCATGCGCAAAG
CCGGCATCCTCGACACGCATTTCGGGCTCATCCTCGCCAATGCGACGGTTGCCATTCCCTTCGCGGTCTGGATGCTGACC
AGCTATGTGGGCGCCATCCCGAAGAGCCTTGACGAAGCCGCGATGATCGATGGCTGCTCGCGGCTCTCAGCGCTGCGCCG
CGTCGTGCTGCCGCTTACCATGCCGGGCATCATCTCCACCGGGATCTACATATTCATCACGGCCTGGAATGAATATCTCT
ACGCGCTGACGCTCGGCGGCAAGAACGTACGGCCCGTTACGGTCGCGATTCAGACCCTGATCGGCGAGTACCAGATCGAA
TGGGGCCTGCTTGCTGCAGGTGCCGTCGTCGGCGCCATGCCTGCCACCATCCTTTTCCTTCTCGTGCAACGCCGGCTGAT
CGGCGGTCTGACCCAGGGCGCGGTGAAGGGCTGA

Upstream 100 bases:

>100_bases
TCGATTTCGGCTACGGCACGACGATCGCCGTCACCTTCACCATTCTCCTCGGCACGATCGTCGCCGTTTATCTCGCCAGG
ACCATGCGGGAGGTCGAACG

Downstream 100 bases:

>100_bases
TTGCGAATGAAAGAGGACTGACCATGAACCCCGTCGGGTTGATCTCCATGCAGTTTGCGCGGCCCTTCACGGCCGAACAT
TTCCCCCATTTCGCCGGGAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNRPSTLRRILTTDLPVLLIVLFAMAPFAWMVLTSLTPTAALNATGVSVSPSGWSLDNYARLLQQTSFLGNMLDSLIIAC
GTVVLGLAVAVTAAYAFSRFRFAGRKLLMLQFLLINMFPIVLLILPLFVLMRKAGILDTHFGLILANATVAIPFAVWMLT
SYVGAIPKSLDEAAMIDGCSRLSALRRVVLPLTMPGIISTGIYIFITAWNEYLYALTLGGKNVRPVTVAIQTLIGEYQIE
WGLLAAGAVVGAMPATILFLLVQRRLIGGLTQGAVKG

Sequences:

>Translated_277_residues
MNRPSTLRRILTTDLPVLLIVLFAMAPFAWMVLTSLTPTAALNATGVSVSPSGWSLDNYARLLQQTSFLGNMLDSLIIAC
GTVVLGLAVAVTAAYAFSRFRFAGRKLLMLQFLLINMFPIVLLILPLFVLMRKAGILDTHFGLILANATVAIPFAVWMLT
SYVGAIPKSLDEAAMIDGCSRLSALRRVVLPLTMPGIISTGIYIFITAWNEYLYALTLGGKNVRPVTVAIQTLIGEYQIE
WGLLAAGAVVGAMPATILFLLVQRRLIGGLTQGAVKG
>Mature_277_residues
MNRPSTLRRILTTDLPVLLIVLFAMAPFAWMVLTSLTPTAALNATGVSVSPSGWSLDNYARLLQQTSFLGNMLDSLIIAC
GTVVLGLAVAVTAAYAFSRFRFAGRKLLMLQFLLINMFPIVLLILPLFVLMRKAGILDTHFGLILANATVAIPFAVWMLT
SYVGAIPKSLDEAAMIDGCSRLSALRRVVLPLTMPGIISTGIYIFITAWNEYLYALTLGGKNVRPVTVAIQTLIGEYQIE
WGLLAAGAVVGAMPATILFLLVQRRLIGGLTQGAVKG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=263, Percent_Identity=34.9809885931559, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790464, Length=198, Percent_Identity=39.3939393939394, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=27.4038461538462, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29858; Mature: 29858

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRPSTLRRILTTDLPVLLIVLFAMAPFAWMVLTSLTPTAALNATGVSVSPSGWSLDNYA
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCCHHHHH
RLLQQTSFLGNMLDSLIIACGTVVLGLAVAVTAAYAFSRFRFAGRKLLMLQFLLINMFPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLILPLFVLMRKAGILDTHFGLILANATVAIPFAVWMLTSYVGAIPKSLDEAAMIDGCS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSALRRVVLPLTMPGIISTGIYIFITAWNEYLYALTLGGKNVRPVTVAIQTLIGEYQIE
HHHHHHHHHHHHCCHHHHHCCHHEEEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHH
WGLLAAGAVVGAMPATILFLLVQRRLIGGLTQGAVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNRPSTLRRILTTDLPVLLIVLFAMAPFAWMVLTSLTPTAALNATGVSVSPSGWSLDNYA
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCCHHHHH
RLLQQTSFLGNMLDSLIIACGTVVLGLAVAVTAAYAFSRFRFAGRKLLMLQFLLINMFPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLILPLFVLMRKAGILDTHFGLILANATVAIPFAVWMLTSYVGAIPKSLDEAAMIDGCS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSALRRVVLPLTMPGIISTGIYIFITAWNEYLYALTLGGKNVRPVTVAIQTLIGEYQIE
HHHHHHHHHHHHCCHHHHHCCHHEEEEEHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHH
WGLLAAGAVVGAMPATILFLLVQRRLIGGLTQGAVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]