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The map label for this gene is ycjO [C]

Identifier: 150395414

GI number: 150395414

Start: 206521

End: 207444

Strand: Direct

Name: ycjO [C]

Synonym: Smed_0187

Alternate gene names: 150395414

Gene position: 206521-207444 (Clockwise)

Preceding gene: 150395413

Following gene: 150395415

Centisome position: 5.46

GC content: 62.66

Gene sequence:

>924_bases
ATGACCGCGACAACAGCACCCCCACCGACCGCCGTGACCATCCCGACGCCCTGGAGCGTACGGATGATGCCCTATATGCT
GCTGGCGCCCGCGGTGCTCGTCACGCTTTTCATCGTCTTTTTCCCGATGGTGCAGGCGGTCTACACCAGCTTCTACGATC
TCATCCTATGGAAGCCGAATGCCAGCCGCTTCGTAGGCTTCGGCAATTATGTAAAACTTTTCGCCGACCCCGTATTCTGG
ACCGCGCTCGGCAACACCGCCATCTGGATCGGCCTGACGGTGCCGCTTCAGATGGGTCTTGGCCTCCTGACCGCGCTGCT
GCTCAATCGCGAATTCCCCTGGCGGGGTCTGGCACGCGCCCTGATCATCATTCCCTGGGCGCTACCGAGTGTGGTGATCG
CGCTGATGTGGCGCTGGATCTACGATCCGAATACCGGCGTGCTGAACGATGTCCTCCTCTACCTTTCCGTCGTGCAGTCG
GCAGTGCCGTGGCTTGCCGATCCGGACCTTGCGCTCTATGCGATCATTGCGACGCTGACCTGGCAGGGTTTCCCCTTCTT
CGCCGTTATGATCCTCGCCGGCCTCCAGGGAATTCCGCGCAGCCACTACGAGGCCGCCTCCATCGATGGTGCGTCGGCCT
GGCGGCAGTTCGTGCACATCACGCTGCCGGGCATCGCCCCGGTGCTTGCGACGGCGGGGCTGCTCCGGGTCATCTGGGTG
GCCAATTCAATGGATGTCATCTTCGTCATGACCGGCGGCGGGCCGGGCTATGCCACGCATACCCTGCCGCTCTACGCCTT
CGTCCGCGCCCGCCAGAATCTCGATTTCGGCTACGGCACGACGATCGCCGTCACCTTCACCATTCTCCTCGGCACGATCG
TCGCCGTTTATCTCGCCAGGACCATGCGGGAGGTCGAACGATGA

Upstream 100 bases:

>100_bases
TGGAGCGGGTGATTCTCCACCCACTTCGACTTCCCATCCGCCCCGCCCTGATATCAGGGCGGATGGGGCCTTTCGATTGC
CAACGGCCGGGAACGACCTG

Downstream 100 bases:

>100_bases
ACAGACCGTCCACGCTCCGTCGTATCCTCACTACCGACCTCCCGGTACTGCTGATCGTGCTCTTCGCCATGGCGCCCTTC
GCCTGGATGGTGCTGACCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTATTAPPPTAVTIPTPWSVRMMPYMLLAPAVLVTLFIVFFPMVQAVYTSFYDLILWKPNASRFVGFGNYVKLFADPVFW
TALGNTAIWIGLTVPLQMGLGLLTALLLNREFPWRGLARALIIIPWALPSVVIALMWRWIYDPNTGVLNDVLLYLSVVQS
AVPWLADPDLALYAIIATLTWQGFPFFAVMILAGLQGIPRSHYEAASIDGASAWRQFVHITLPGIAPVLATAGLLRVIWV
ANSMDVIFVMTGGGPGYATHTLPLYAFVRARQNLDFGYGTTIAVTFTILLGTIVAVYLARTMREVER

Sequences:

>Translated_307_residues
MTATTAPPPTAVTIPTPWSVRMMPYMLLAPAVLVTLFIVFFPMVQAVYTSFYDLILWKPNASRFVGFGNYVKLFADPVFW
TALGNTAIWIGLTVPLQMGLGLLTALLLNREFPWRGLARALIIIPWALPSVVIALMWRWIYDPNTGVLNDVLLYLSVVQS
AVPWLADPDLALYAIIATLTWQGFPFFAVMILAGLQGIPRSHYEAASIDGASAWRQFVHITLPGIAPVLATAGLLRVIWV
ANSMDVIFVMTGGGPGYATHTLPLYAFVRARQNLDFGYGTTIAVTFTILLGTIVAVYLARTMREVER
>Mature_306_residues
TATTAPPPTAVTIPTPWSVRMMPYMLLAPAVLVTLFIVFFPMVQAVYTSFYDLILWKPNASRFVGFGNYVKLFADPVFWT
ALGNTAIWIGLTVPLQMGLGLLTALLLNREFPWRGLARALIIIPWALPSVVIALMWRWIYDPNTGVLNDVLLYLSVVQSA
VPWLADPDLALYAIIATLTWQGFPFFAVMILAGLQGIPRSHYEAASIDGASAWRQFVHITLPGIAPVLATAGLLRVIWVA
NSMDVIFVMTGGGPGYATHTLPLYAFVRARQNLDFGYGTTIAVTFTILLGTIVAVYLARTMREVER

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=261, Percent_Identity=33.7164750957854, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790465, Length=258, Percent_Identity=28.2945736434109, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789861, Length=299, Percent_Identity=28.4280936454849, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33853; Mature: 33721

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTAPPPTAVTIPTPWSVRMMPYMLLAPAVLVTLFIVFFPMVQAVYTSFYDLILWKPN
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
ASRFVGFGNYVKLFADPVFWTALGNTAIWIGLTVPLQMGLGLLTALLLNREFPWRGLARA
CCCEECCCHHHHHHHCHHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIIIPWALPSVVIALMWRWIYDPNTGVLNDVLLYLSVVQSAVPWLADPDLALYAIIATLT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
WQGFPFFAVMILAGLQGIPRSHYEAASIDGASAWRQFVHITLPGIAPVLATAGLLRVIWV
CCCCHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
ANSMDVIFVMTGGGPGYATHTLPLYAFVRARQNLDFGYGTTIAVTFTILLGTIVAVYLAR
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TMREVER
HHHHHCC
>Mature Secondary Structure 
TATTAPPPTAVTIPTPWSVRMMPYMLLAPAVLVTLFIVFFPMVQAVYTSFYDLILWKPN
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
ASRFVGFGNYVKLFADPVFWTALGNTAIWIGLTVPLQMGLGLLTALLLNREFPWRGLARA
CCCEECCCHHHHHHHCHHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIIIPWALPSVVIALMWRWIYDPNTGVLNDVLLYLSVVQSAVPWLADPDLALYAIIATLT
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
WQGFPFFAVMILAGLQGIPRSHYEAASIDGASAWRQFVHITLPGIAPVLATAGLLRVIWV
CCCCHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
ANSMDVIFVMTGGGPGYATHTLPLYAFVRARQNLDFGYGTTIAVTFTILLGTIVAVYLAR
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TMREVER
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]