| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is yqgH [H]
Identifier: 150395348
GI number: 150395348
Start: 133960
End: 135444
Strand: Direct
Name: yqgH [H]
Synonym: Smed_0120
Alternate gene names: 150395348
Gene position: 133960-135444 (Clockwise)
Preceding gene: 150395347
Following gene: 150395349
Centisome position: 3.54
GC content: 61.75
Gene sequence:
>1485_bases ATGAGTACTTCGCTCCTTCTCCTGATCATTGCCTTGATCGGTTTCATTGCGTTTCTTGCCGGCCGCTCCCGCTCGTTCGC CCGGTCCGGAGGCAAGCTCTCCAGCCTGCATTCCCTGCCCGGCTATCACGGCAGCTACGTCGCAATCTGGGCGACGTTGC CAGCGCTTCTTCTTCTTGCCATATGGCTCATCACCTCTCCGGTCTATATCGATTACACGGTTCGTTCGTCTCTTCCGGAA CCGGTCCAAAGCCAGGGGGCAGCCACCCTCCAGCTGGCGCTCGGTCAGGTCAAGTCGGTTGCCGCAGGCTTCGAGCGGCT GAACGCGAGCGAGATCTCCGCGATCGAAAACGGTTCGGCCAACATGCGCGAGACGCTCGCCTCGAAGGGCGTCGCACTTG CCGGCGAGGGCGAGCCTTACATGGTCAAGGCCGCCCAGCAGTTCAACGCGATGCGGCAATATAGCCGCTGGCTGATGAGT GTCGCGGTGCTGCTCGTTTCCGTTGCCGGCGCTTTCTACGCACTCCGCAACATCGACGTCCGCTTCCGCGCCCGCAACCG GGTGGAGCGCGTCATGCTCGGCTCCCTCATCCTGGCCTCCTCCATTGCCATTCTGACGACGGTCGGAATCGTCGCCTCCA TGCTTTCGGAAGCGGGTCGGTTCTTCACCATGGTGTCGCCCATGGAGTTCTTCTTCGGCACGGTCTGGGACCCGCGCTTC GCAGCGGCCGGAAGCGGCGGCGCTTCGGGCCAGTTCGGTCTGCTGCCGCTGCTTGCAGGCACGCTGTATATCGCATTCGT AGCGATGCTTTTCGCCGTGCCGATCGGACTCTTCGCTGCTATTTACATGGCGGAGTATGCGAGCCCGCGGCTGCGTTCCA TAGCCAAGCCTCTGCTGGAGGTGCTCGCCGGTATCCCGACAATCGTCTACGGTTTTTTCGCGCTCGTCACAGTGGGACCT TTCCTGCGCGACATCTCCACGCAGCTGAACGGCGTCCTCACCGGAAATTACCAGAACTTCATTCAGGCCCAGAGCGTCAT CACCGCCGGCATCGTCATGGGCATCATGCTCATTCCGTTCGTCTCGTCTTTGTCCGACGACATCATCACCCAGGTGCCGC GGGCATTGCGTGACGGTTCGCTCGGCCTTGGTGCGACGCGGTCGGAGACGGTGAAGAAGGTGATCCTGCCGGCAGCACTT CCTGGCATCGTCGGTGCGCTGCTGCTGACGGCATCGCGGGCGGTCGGCGAGACGATGATCGTCGTGCTCGCTGCCGGTGT TGCAGCTCGAATGCAGTTTAACCCCCTCGAGCCGATGACCACCGTGACGGTCAAGATCGTGAACCAGCTGACGGGCGACC TCGAGTTCACCTCGCCGCAGACCCTGGTCGCCTTCGCACTCGGCATCACGCTCTTCGTTATCACGCTGGGCCTCAACATC TACGCGCTCTACATCGTGCGCAAATATCGGGAACAGTACGAATGA
Upstream 100 bases:
>100_bases CTCTGATCATGGCTGGGCTCCGGCGCCACTCTTGCGCCGGAGCCGCATTCTTCCGAACTTGACTGGCGGCTTGTGACGAG CCTGTCGCGGAGACGTGCCG
Downstream 100 bases:
>100_bases CCGAATTTGCCTCCCCGACAGCAAGGGTCTCCACCCGACCTGCTGCAAGCCGCCGCGATATCGGTATCAAGCGCCGCTAT GCCGCTGAGCGCCGCTTCCG
Product: phosphate ABC transporter inner membrane subunit PstC
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MSTSLLLLIIALIGFIAFLAGRSRSFARSGGKLSSLHSLPGYHGSYVAIWATLPALLLLAIWLITSPVYIDYTVRSSLPE PVQSQGAATLQLALGQVKSVAAGFERLNASEISAIENGSANMRETLASKGVALAGEGEPYMVKAAQQFNAMRQYSRWLMS VAVLLVSVAGAFYALRNIDVRFRARNRVERVMLGSLILASSIAILTTVGIVASMLSEAGRFFTMVSPMEFFFGTVWDPRF AAAGSGGASGQFGLLPLLAGTLYIAFVAMLFAVPIGLFAAIYMAEYASPRLRSIAKPLLEVLAGIPTIVYGFFALVTVGP FLRDISTQLNGVLTGNYQNFIQAQSVITAGIVMGIMLIPFVSSLSDDIITQVPRALRDGSLGLGATRSETVKKVILPAAL PGIVGALLLTASRAVGETMIVVLAAGVAARMQFNPLEPMTTVTVKIVNQLTGDLEFTSPQTLVAFALGITLFVITLGLNI YALYIVRKYREQYE
Sequences:
>Translated_494_residues MSTSLLLLIIALIGFIAFLAGRSRSFARSGGKLSSLHSLPGYHGSYVAIWATLPALLLLAIWLITSPVYIDYTVRSSLPE PVQSQGAATLQLALGQVKSVAAGFERLNASEISAIENGSANMRETLASKGVALAGEGEPYMVKAAQQFNAMRQYSRWLMS VAVLLVSVAGAFYALRNIDVRFRARNRVERVMLGSLILASSIAILTTVGIVASMLSEAGRFFTMVSPMEFFFGTVWDPRF AAAGSGGASGQFGLLPLLAGTLYIAFVAMLFAVPIGLFAAIYMAEYASPRLRSIAKPLLEVLAGIPTIVYGFFALVTVGP FLRDISTQLNGVLTGNYQNFIQAQSVITAGIVMGIMLIPFVSSLSDDIITQVPRALRDGSLGLGATRSETVKKVILPAAL PGIVGALLLTASRAVGETMIVVLAAGVAARMQFNPLEPMTTVTVKIVNQLTGDLEFTSPQTLVAFALGITLFVITLGLNI YALYIVRKYREQYE >Mature_493_residues STSLLLLIIALIGFIAFLAGRSRSFARSGGKLSSLHSLPGYHGSYVAIWATLPALLLLAIWLITSPVYIDYTVRSSLPEP VQSQGAATLQLALGQVKSVAAGFERLNASEISAIENGSANMRETLASKGVALAGEGEPYMVKAAQQFNAMRQYSRWLMSV AVLLVSVAGAFYALRNIDVRFRARNRVERVMLGSLILASSIAILTTVGIVASMLSEAGRFFTMVSPMEFFFGTVWDPRFA AAGSGGASGQFGLLPLLAGTLYIAFVAMLFAVPIGLFAAIYMAEYASPRLRSIAKPLLEVLAGIPTIVYGFFALVTVGPF LRDISTQLNGVLTGNYQNFIQAQSVITAGIVMGIMLIPFVSSLSDDIITQVPRALRDGSLGLGATRSETVKKVILPAALP GIVGALLLTASRAVGETMIVVLAAGVAARMQFNPLEPMTTVTVKIVNQLTGDLEFTSPQTLVAFALGITLFVITLGLNIY ALYIVRKYREQYE
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0573
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=291, Percent_Identity=27.1477663230241, Blast_Score=98, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 52757; Mature: 52626
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSLLLLIIALIGFIAFLAGRSRSFARSGGKLSSLHSLPGYHGSYVAIWATLPALLLLA CCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH IWLITSPVYIDYTVRSSLPEPVQSQGAATLQLALGQVKSVAAGFERLNASEISAIENGSA HHHHCCCCEEEEEHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC NMRETLASKGVALAGEGEPYMVKAAQQFNAMRQYSRWLMSVAVLLVSVAGAFYALRNIDV HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RFRARNRVERVMLGSLILASSIAILTTVGIVASMLSEAGRFFTMVSPMEFFFGTVWDPRF EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHCCCCCCH AAAGSGGASGQFGLLPLLAGTLYIAFVAMLFAVPIGLFAAIYMAEYASPRLRSIAKPLLE HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VLAGIPTIVYGFFALVTVGPFLRDISTQLNGVLTGNYQNFIQAQSVITAGIVMGIMLIPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH VSSLSDDIITQVPRALRDGSLGLGATRSETVKKVILPAALPGIVGALLLTASRAVGETMI HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLAAGVAARMQFNPLEPMTTVTVKIVNQLTGDLEFTSPQTLVAFALGITLFVITLGLNI HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH YALYIVRKYREQYE HHHHHHHHHHHHCC >Mature Secondary Structure STSLLLLIIALIGFIAFLAGRSRSFARSGGKLSSLHSLPGYHGSYVAIWATLPALLLLA CHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH IWLITSPVYIDYTVRSSLPEPVQSQGAATLQLALGQVKSVAAGFERLNASEISAIENGSA HHHHCCCCEEEEEHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC NMRETLASKGVALAGEGEPYMVKAAQQFNAMRQYSRWLMSVAVLLVSVAGAFYALRNIDV HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RFRARNRVERVMLGSLILASSIAILTTVGIVASMLSEAGRFFTMVSPMEFFFGTVWDPRF EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHCCCCCCH AAAGSGGASGQFGLLPLLAGTLYIAFVAMLFAVPIGLFAAIYMAEYASPRLRSIAKPLLE HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH VLAGIPTIVYGFFALVTVGPFLRDISTQLNGVLTGNYQNFIQAQSVITAGIVMGIMLIPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH VSSLSDDIITQVPRALRDGSLGLGATRSETVKKVILPAALPGIVGALLLTASRAVGETMI HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLAAGVAARMQFNPLEPMTTVTVKIVNQLTGDLEFTSPQTLVAFALGITLFVITLGLNI HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH YALYIVRKYREQYE HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]