| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is pstS [H]
Identifier: 150395347
GI number: 150395347
Start: 132831
End: 133865
Strand: Direct
Name: pstS [H]
Synonym: Smed_0119
Alternate gene names: 150395347
Gene position: 132831-133865 (Clockwise)
Preceding gene: 150395346
Following gene: 150395348
Centisome position: 3.51
GC content: 59.32
Gene sequence:
>1035_bases ATGAAAGCTCTTAAATTTACCGCAGCGGCGTTGGTTGCCTCCGCCGCTTTTGCGGGCGTTGCAGCGGCTCGCGACCAGAT CCAGGTGGCCGGCTCCTCGACCGTTCTTCCCTATGCAAAGATCGTTGCCGAAAACTTCGGCGAGACATTCCCTGACTTCA AAACGCCCGTAATCGAGTCCGGCGGTTCGTCGGCCGGCCTGAAGGAATTCTGCAAGGGCGTTGGTGAAGACACGATCGAT ATCGCCAATTCGTCGCGCAAGATCAAAGACAGCGAAGTCGAGGCCTGCAAAGCTGCCGGCGTGACCGAGATCCAGGAAGT GAAGATCGGCTATGACGGCATCGTCTTCGCCACCGATGCCGGCAATGCCGACCTGACTCTGAAGCCGGAGCACCTCTACA AGGCGCTTGCCGCCGAAATCGTCGTCGATGGGAAGCTCGTCGCGAATCCCTACAAGAAGTGGTCGGAAGTCGACGCTTCG CTGCCGGACGCCGAAATTGCTGCCTATATTCCGGGCGAGAAGCATGGAACGCGCGAAGTCTTCGAAGAGAAGATCCTCGC TGCCGGCTGCAAGGACTCCGGCGCTCAGGACGTCATCAAGGCGGCCGTGAGCGATGAAAAGCAGCAGCACAGCAAGTGCG TGGCCGTACGCAAGGACGGCATGGCCGTGGACATCGACGGCGACTACACCGAGACGCTGGCGCGCATCGCTTCGAACAAG AACGGCATCGGCGTCTTCGGCCTTTCGTTCTTCGAAAATAACGCCGACAAGCTGAAGGTTGCGACGGTCAACGGCGTTGT TCCTTCGACGGAAACGATCGCTTCCGGCGAGTATCCGGTTTCCCGTCCGCTTTTCTTCTACGTCAAGAAGGCCCATATCG GCGTTATTCCCGGCCTCAAGGAATATGTCGAGTTCTTCGTTGACGATCAGATGATCGGCCCCGACAGCCCGCTCGCCGAA TACGGCCTCGTCGCCGCTCCGGACGCCGAGCGCGAAGAAATCCGCCAGTCCTTCGAGGCAGGCAACCTGCTCTGA
Upstream 100 bases:
>100_bases AAGCTGTAGCCATCGGCGGCTAACTAGGGGCGCCGCAGAAACGGCGAGAGAGCGCTGAACCCTGGCGCACCCAACACAAG CCCATTCCGGGAGAACACTT
Downstream 100 bases:
>100_bases TCATGGCTGGGCTCCGGCGCCACTCTTGCGCCGGAGCCGCATTCTTCCGAACTTGACTGGCGGCTTGTGACGAGCCTGTC GCGGAGACGTGCCGATGAGT
Product: putative phosphate-binding periplasmic protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MKALKFTAAALVASAAFAGVAAARDQIQVAGSSTVLPYAKIVAENFGETFPDFKTPVIESGGSSAGLKEFCKGVGEDTID IANSSRKIKDSEVEACKAAGVTEIQEVKIGYDGIVFATDAGNADLTLKPEHLYKALAAEIVVDGKLVANPYKKWSEVDAS LPDAEIAAYIPGEKHGTREVFEEKILAAGCKDSGAQDVIKAAVSDEKQQHSKCVAVRKDGMAVDIDGDYTETLARIASNK NGIGVFGLSFFENNADKLKVATVNGVVPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLKEYVEFFVDDQMIGPDSPLAE YGLVAAPDAEREEIRQSFEAGNLL
Sequences:
>Translated_344_residues MKALKFTAAALVASAAFAGVAAARDQIQVAGSSTVLPYAKIVAENFGETFPDFKTPVIESGGSSAGLKEFCKGVGEDTID IANSSRKIKDSEVEACKAAGVTEIQEVKIGYDGIVFATDAGNADLTLKPEHLYKALAAEIVVDGKLVANPYKKWSEVDAS LPDAEIAAYIPGEKHGTREVFEEKILAAGCKDSGAQDVIKAAVSDEKQQHSKCVAVRKDGMAVDIDGDYTETLARIASNK NGIGVFGLSFFENNADKLKVATVNGVVPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLKEYVEFFVDDQMIGPDSPLAE YGLVAAPDAEREEIRQSFEAGNLL >Mature_344_residues MKALKFTAAALVASAAFAGVAAARDQIQVAGSSTVLPYAKIVAENFGETFPDFKTPVIESGGSSAGLKEFCKGVGEDTID IANSSRKIKDSEVEACKAAGVTEIQEVKIGYDGIVFATDAGNADLTLKPEHLYKALAAEIVVDGKLVANPYKKWSEVDAS LPDAEIAAYIPGEKHGTREVFEEKILAAGCKDSGAQDVIKAAVSDEKQQHSKCVAVRKDGMAVDIDGDYTETLARIASNK NGIGVFGLSFFENNADKLKVATVNGVVPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLKEYVEFFVDDQMIGPDSPLAE YGLVAAPDAEREEIRQSFEAGNLL
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36536; Mature: 36536
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALKFTAAALVASAAFAGVAAARDQIQVAGSSTVLPYAKIVAENFGETFPDFKTPVIES CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHCC GGSSAGLKEFCKGVGEDTIDIANSSRKIKDSEVEACKAAGVTEIQEVKIGYDGIVFATDA CCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHEEECCCCEEEEECC GNADLTLKPEHLYKALAAEIVVDGKLVANPYKKWSEVDASLPDAEIAAYIPGEKHGTREV CCCCEEECHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH FEEKILAAGCKDSGAQDVIKAAVSDEKQQHSKCVAVRKDGMAVDIDGDYTETLARIASNK HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHHHCCC NGIGVFGLSFFENNADKLKVATVNGVVPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLK CCEEEEEEHHHCCCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCEEEEEHHHCCCCCCHH EYVEFFVDDQMIGPDSPLAEYGLVAAPDAEREEIRQSFEAGNLL HHHHHHHCCCCCCCCCCHHHCCEEECCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MKALKFTAAALVASAAFAGVAAARDQIQVAGSSTVLPYAKIVAENFGETFPDFKTPVIES CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHCC GGSSAGLKEFCKGVGEDTIDIANSSRKIKDSEVEACKAAGVTEIQEVKIGYDGIVFATDA CCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCHHHHEEECCCCEEEEECC GNADLTLKPEHLYKALAAEIVVDGKLVANPYKKWSEVDASLPDAEIAAYIPGEKHGTREV CCCCEEECHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH FEEKILAAGCKDSGAQDVIKAAVSDEKQQHSKCVAVRKDGMAVDIDGDYTETLARIASNK HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHHHCCC NGIGVFGLSFFENNADKLKVATVNGVVPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLK CCEEEEEEHHHCCCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCEEEEEHHHCCCCCCHH EYVEFFVDDQMIGPDSPLAEYGLVAAPDAEREEIRQSFEAGNLL HHHHHHHCCCCCCCCCCHHHCCEEECCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA