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The map label for this gene is yhdW [H]

Identifier: 150010481

GI number: 150010481

Start: 4752207

End: 4753157

Strand: Direct

Name: yhdW [H]

Synonym: BDI_3922

Alternate gene names: 150010481

Gene position: 4752207-4753157 (Clockwise)

Preceding gene: 150010480

Following gene: 150010482

Centisome position: 98.77

GC content: 44.06

Gene sequence:

>951_bases
ATGAAACTCAATTTATCCGCCAGATTTTTAATGCTGGTCCTGCTTTGTGGTTCTTGCGTATTGAACACGCCAAAGGAGGA
GCTTGAATACAAGGGAATGAATACGCTACAGATATCAAATGTAGATGATTTGATATCTTTCTACCAATATGCGGATGACC
GAATTCCTTTAATTAGCGGGCACCGAGGCGGACGGGGAAAAGGTTATCCTGAGAACAGTATGGAAACCTTTGAAAATACC
CTCTCTTATACTCCTGCCACGTTCGAGATAGATCCGAGGTTAACCAAAGATAGTGTTATCGTCCTTTTCCACGATGATAC
ACTGGAGCGTACCAGTAATGGGACCGGGAAAGTTTCTGATTATACTTGGGAAGAATTGCAAAATTTCCGTTTGAAGGATC
CCGAAGGAAATATCACAAACTATCGTATCCCGACTTTAGAGGAAGCGATTCGTTGGGCCCGTGGAAAAACAATCCTAATC
CTTGATAAGAAGGATGTTCCGATGGAGCGCACTGCTCAGTTGATTACCGATATGCAAGCGGAACCTTATGTAATGATTAC
GGTTCATGATGGTGCCTCGGCTCGTTTCTTTTACGAGAAAAATCCGAATTTCATGTTTGAGGCTTTCGTGAAAACGAAAG
AAGCGGTTCAAGACTATGAGGATAACGGTATACCTTGGAGCCATATCATGGCTTACGTAGGTCCGAAGATTACCCCCGAA
GTCCGTGAGGTAATCGATATGTTGCATGAAAGAGGTGTCATGTGCATGATATCTACCGCTCCCTCCGACGATAAACTATC
CACACCCGAAAGTCGTGCTGAAGCATACCGTATGATCATCCGTCAAGGCGTGGACATCATAGAGTCTGACCGACCTATAG
AGGTTGCTGAAGCGATCTCTAGCTTGATTCCGGTTAGCAGTTCCAAAGGAAAGTTTTTCTCTACACTATAA

Upstream 100 bases:

>100_bases
AGAAAGTTGACGAATATTAAGGTGCTAACTCTGTAAAATCATTTATTTTGTGTAAGTTTGGCGGATAGAAAGAATCATTC
ACCTAAAATACGATTGTGAA

Downstream 100 bases:

>100_bases
ACATAATCAATATAAAACATGAACAAAGAACTAGAAATGACTCCCAACGTATTAGTGGAGTTTTTACAAAAGCCAGCGTC
CGAGTTTACGAAAGAGGACA

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKLNLSARFLMLVLLCGSCVLNTPKEELEYKGMNTLQISNVDDLISFYQYADDRIPLISGHRGGRGKGYPENSMETFENT
LSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGTGKVSDYTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARGKTILI
LDKKDVPMERTAQLITDMQAEPYVMITVHDGASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPE
VREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPIEVAEAISSLIPVSSSKGKFFSTL

Sequences:

>Translated_316_residues
MKLNLSARFLMLVLLCGSCVLNTPKEELEYKGMNTLQISNVDDLISFYQYADDRIPLISGHRGGRGKGYPENSMETFENT
LSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGTGKVSDYTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARGKTILI
LDKKDVPMERTAQLITDMQAEPYVMITVHDGASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPE
VREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPIEVAEAISSLIPVSSSKGKFFSTL
>Mature_316_residues
MKLNLSARFLMLVLLCGSCVLNTPKEELEYKGMNTLQISNVDDLISFYQYADDRIPLISGHRGGRGKGYPENSMETFENT
LSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGTGKVSDYTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARGKTILI
LDKKDVPMERTAQLITDMQAEPYVMITVHDGASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPE
VREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPIEVAEAISSLIPVSSSKGKFFSTL

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=71, Percent_Identity=45.0704225352113, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542344, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 35921; Mature: 35921

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNLSARFLMLVLLCGSCVLNTPKEELEYKGMNTLQISNVDDLISFYQYADDRIPLISG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEC
HRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGTGKVSD
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCHHHCCCCCCCCCC
YTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARGKTILILDKKDVPMERTAQLITDMQA
CCHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCC
EPYVMITVHDGASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPE
CCEEEEEEECCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHH
VREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPIEVAEAIS
HHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHH
SLIPVSSSKGKFFSTL
HHCCCCCCCCCEECCC
>Mature Secondary Structure
MKLNLSARFLMLVLLCGSCVLNTPKEELEYKGMNTLQISNVDDLISFYQYADDRIPLISG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEC
HRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGTGKVSD
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCHHHCCCCCCCCCC
YTWEELQNFRLKDPEGNITNYRIPTLEEAIRWARGKTILILDKKDVPMERTAQLITDMQA
CCHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCC
EPYVMITVHDGASARFFYEKNPNFMFEAFVKTKEAVQDYEDNGIPWSHIMAYVGPKITPE
CCEEEEEEECCCCEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHH
VREVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESDRPIEVAEAIS
HHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHH
SLIPVSSSKGKFFSTL
HHCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]