| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
Click here to switch to the map view.
The map label for this gene is engD [H]
Identifier: 150009574
GI number: 150009574
Start: 3576693
End: 3577796
Strand: Direct
Name: engD [H]
Synonym: BDI_2987
Alternate gene names: 150009574
Gene position: 3576693-3577796 (Clockwise)
Preceding gene: 150009561
Following gene: 150009575
Centisome position: 74.34
GC content: 47.55
Gene sequence:
>1104_bases ATGGCATTACAATGTGGCATTGTGGGACTTCCGAACGTAGGAAAGTCTACCCTTTTCAATTGCCTATCCAATGCGAAGGC ACAATCAGCGAACTTTCCGTTCTGTACGATCGAACCGAATGTAGGCGTGATCACCGTACCCGACGAGCGACTGAATAAAC TAGCGGAAATCGAACATCCGCAGCGAGTGATCCCCACCACCGTAGAGATCGTGGATATCGCCGGATTGGTGAAAGGAGCG AGTAAAGGCGAGGGATTAGGCAATAAGTTCTTGGCTAATATCCGTGAGACAGACGCTATCTTGCACGTATTGCGTTGCTT CGACGACGATAATATCGTGCACGTGGACGGACGTGTAGACCCGGTCCGTGATAAGGAGATCATTGACTATGAGCTTCAGA TCAAGGATTTGGAAACGATAGACAGCCGTATCGCCAAGGTGCAAAAACAAGCGCAAACCGGAGGTGATAAGCAAGCCAAG ATCGCTTACGAGGTACTTTGTAAATACAAAGAGGCTTTAGAACAAGGAAAAAGCGCACGTACCGTTTCTTTTGATACGAA AGACGAGGAACGCATTGCCCACGATTTATTCTTGCTGACGGATAAACCTGTCATGTATGTTTGTAACGTGGATGAGGCTA GCGCCGTAAACGGCAATAAATATGTAGATGCCGTACGCGAGGCGGTTAAAGACGAGGATGCCCAGATTCTAGTAGTCGCC GCTAAGATCGAGAGCGAGATCGCTGAGTTCGATACCTATGAGGAACGCCAGATGTTCTTACAAGAGATCGGATTGGAAGA GTCTGGCGTAAGCCGTTTGATTAAATCGGCTTACAAATTATTGAATCTGCAAACCTTCTTGACCGCCGGATCGGACGAAT GTCGTGCGTGGACGTTCCATAAAGGCTGGAAAGCTCCTCAATGCGCCGGTGTTATCCATACGGACTTCGAAAAAGGATTT ATCCGTGCCGAGGTGATCAAGTACGAGGATTATATCGCTTATGGCTCCGAGGCTGCTGTTAAAGAGGCCGGAAAGATGAG CGTTGAAGGTAAGGAATATGTTGTGCAAGATGGAGATATCATGCATTTCCGTTTCAATGTATAA
Upstream 100 bases:
>100_bases AAAACAGAGGCTTTTGTTACCAGTTTGTTACTTACTCACTCTTAACCCCTCTTTTATATTATTAAAAATCAAATGATTAA ATATAATAACACATAATATT
Downstream 100 bases:
>100_bases GGAGTAATCGAAATAAATTATATCTTTGAAACCGGGTAAAATAGCGTAAAGCTAATTTTACCCGGTTTTCTTATATCCTT TAAATCTATATGTATATGAA
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MALQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLAEIEHPQRVIPTTVEIVDIAGLVKGA SKGEGLGNKFLANIRETDAILHVLRCFDDDNIVHVDGRVDPVRDKEIIDYELQIKDLETIDSRIAKVQKQAQTGGDKQAK IAYEVLCKYKEALEQGKSARTVSFDTKDEERIAHDLFLLTDKPVMYVCNVDEASAVNGNKYVDAVREAVKDEDAQILVVA AKIESEIAEFDTYEERQMFLQEIGLEESGVSRLIKSAYKLLNLQTFLTAGSDECRAWTFHKGWKAPQCAGVIHTDFEKGF IRAEVIKYEDYIAYGSEAAVKEAGKMSVEGKEYVVQDGDIMHFRFNV
Sequences:
>Translated_367_residues MALQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLAEIEHPQRVIPTTVEIVDIAGLVKGA SKGEGLGNKFLANIRETDAILHVLRCFDDDNIVHVDGRVDPVRDKEIIDYELQIKDLETIDSRIAKVQKQAQTGGDKQAK IAYEVLCKYKEALEQGKSARTVSFDTKDEERIAHDLFLLTDKPVMYVCNVDEASAVNGNKYVDAVREAVKDEDAQILVVA AKIESEIAEFDTYEERQMFLQEIGLEESGVSRLIKSAYKLLNLQTFLTAGSDECRAWTFHKGWKAPQCAGVIHTDFEKGF IRAEVIKYEDYIAYGSEAAVKEAGKMSVEGKEYVVQDGDIMHFRFNV >Mature_366_residues ALQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLAEIEHPQRVIPTTVEIVDIAGLVKGAS KGEGLGNKFLANIRETDAILHVLRCFDDDNIVHVDGRVDPVRDKEIIDYELQIKDLETIDSRIAKVQKQAQTGGDKQAKI AYEVLCKYKEALEQGKSARTVSFDTKDEERIAHDLFLLTDKPVMYVCNVDEASAVNGNKYVDAVREAVKDEDAQILVVAA KIESEIAEFDTYEERQMFLQEIGLEESGVSRLIKSAYKLLNLQTFLTAGSDECRAWTFHKGWKAPQCAGVIHTDFEKGFI RAEVIKYEDYIAYGSEAAVKEAGKMSVEGKEYVVQDGDIMHFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=48.1081081081081, Blast_Score=343, Evalue=2e-94, Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=42.9824561403509, Blast_Score=175, Evalue=7e-44, Organism=Homo sapiens, GI111955139, Length=99, Percent_Identity=34.3434343434343, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI1787454, Length=367, Percent_Identity=57.2207084468665, Blast_Score=421, Evalue=1e-119, Organism=Escherichia coli, GI1789574, Length=128, Percent_Identity=33.59375, Blast_Score=78, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=45.0819672131148, Blast_Score=319, Evalue=2e-87, Organism=Saccharomyces cerevisiae, GI6319499, Length=374, Percent_Identity=41.7112299465241, Blast_Score=269, Evalue=4e-73, Organism=Saccharomyces cerevisiae, GI6321773, Length=382, Percent_Identity=36.3874345549738, Blast_Score=217, Evalue=3e-57, Organism=Saccharomyces cerevisiae, GI6321649, Length=144, Percent_Identity=38.1944444444444, Blast_Score=82, Evalue=1e-16, Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=45.6521739130435, Blast_Score=320, Evalue=1e-87, Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=45.6521739130435, Blast_Score=320, Evalue=1e-87, Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=45.6521739130435, Blast_Score=320, Evalue=1e-87, Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=43.7308868501529, Blast_Score=264, Evalue=9e-71, Organism=Drosophila melanogaster, GI24585318, Length=102, Percent_Identity=36.2745098039216, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 40863; Mature: 40732
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLAEIEHP CCEEECCEECCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHCCCC QRVIPTTVEIVDIAGLVKGASKGEGLGNKFLANIRETDAILHVLRCFDDDNIVHVDGRVD CHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC PVRDKEIIDYELQIKDLETIDSRIAKVQKQAQTGGDKQAKIAYEVLCKYKEALEQGKSAR CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE TVSFDTKDEERIAHDLFLLTDKPVMYVCNVDEASAVNGNKYVDAVREAVKDEDAQILVVA EEEECCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE AKIESEIAEFDTYEERQMFLQEIGLEESGVSRLIKSAYKLLNLQTFLTAGSDECRAWTFH EHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEC KGWKAPQCAGVIHTDFEKGFIRAEVIKYEDYIAYGSEAAVKEAGKMSVEGKEYVVQDGDI CCCCCCCCCCEEECCCCCCCEEEEEEEHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCE MHFRFNV EEEEECC >Mature Secondary Structure ALQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLAEIEHP CEEECCEECCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEECCHHHHHHHHHCCCC QRVIPTTVEIVDIAGLVKGASKGEGLGNKFLANIRETDAILHVLRCFDDDNIVHVDGRVD CHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC PVRDKEIIDYELQIKDLETIDSRIAKVQKQAQTGGDKQAKIAYEVLCKYKEALEQGKSAR CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE TVSFDTKDEERIAHDLFLLTDKPVMYVCNVDEASAVNGNKYVDAVREAVKDEDAQILVVA EEEECCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE AKIESEIAEFDTYEERQMFLQEIGLEESGVSRLIKSAYKLLNLQTFLTAGSDECRAWTFH EHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEC KGWKAPQCAGVIHTDFEKGFIRAEVIKYEDYIAYGSEAAVKEAGKMSVEGKEYVVQDGDI CCCCCCCCCCEEECCCCCCCEEEEEEEHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCE MHFRFNV EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]