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The map label for this gene is hupZ [H]

Identifier: 150008431

GI number: 150008431

Start: 2162596

End: 2163333

Strand: Direct

Name: hupZ [H]

Synonym: BDI_1813

Alternate gene names: 150008431

Gene position: 2162596-2163333 (Clockwise)

Preceding gene: 150008430

Following gene: 150008432

Centisome position: 44.95

GC content: 44.99

Gene sequence:

>738_bases
ATGAAGAGTCGTAAGAAACGTTTAAGAGAAGTGTATGTATGGGAATTACCCGTACGTATCTATCATTGGGTGAATGCGCT
CTGTATCGTCATACTCTGCGTGACAGGCTTTATCATCGCCGATCCTCCCGCAATCATGTCCGCTTCGGAGGCTTATTTCA
GCTATTGGTTCGGCGTGGTTCGGTTTATCCATTTCGTAACAGCGTTCGTATTCTTCTTCAATTTCGTATTCCGGCTTTAT
TGGGGATTCGTCGGGAATCGTTATGCCAGATGGAATAACTTCATCCCTTTAAAGAAATCCCAATGGAAAGAGGTATTGGA
GGTGATCAAGGTAGATATCTTGATGATTAAGAACAAACCGGTAGACAGTATCGGGCATAACGCCTTGGCTAGCTTGATTT
ATTTCGGAACTTTCTGGGCATTTTTGTTACAAAGTATCACAGGATTCGGCCTGTACGCGAAGATGAGCCAGTCCTTCTTC
CCGCAACTGTTCGCATGGACAGTTCCCTTGATGGGCGGGGATTTGATGGCTCGCCAGATCCATCATTTCCTGATGTGGTT
CTTCATCCTTTTCGCTATCGTTCATATTTATCTGGTATTTTATCATGACTATATCGAGCAACGTGGCGAGACTTCGTCCA
TCATCGGTGGCTGGAAGTTTATCGAGGAAGACATAGCGGACAAGGAAGAGGTAACCGAGACTGCCGAGACTATCACTAAG
ATCGCTAAAAAAGGATGA

Upstream 100 bases:

>100_bases
TCCACTCTTTCGATCCTTGTCTGGCTTGTGCCGTGCATCTGTATGACGAGGAAGGAAAATATGTGCACCAAGTTGATACA
TTCTAAAAAACAATAGAGCC

Downstream 100 bases:

>100_bases
AAGCGGAGAAGGAAACATTAGTATTAGGAGTAGGCAATTTATTGCTGAAAGACGAAGGGGTAGGCATACACGTTATCAAG
GCTTTAGAAAACGAGAAGCT

Product: NiFe hydrogenase small subunit, HupC

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKSRKKRLREVYVWELPVRIYHWVNALCIVILCVTGFIIADPPAIMSASEAYFSYWFGVVRFIHFVTAFVFFFNFVFRLY
WGFVGNRYARWNNFIPLKKSQWKEVLEVIKVDILMIKNKPVDSIGHNALASLIYFGTFWAFLLQSITGFGLYAKMSQSFF
PQLFAWTVPLMGGDLMARQIHHFLMWFFILFAIVHIYLVFYHDYIEQRGETSSIIGGWKFIEEDIADKEEVTETAETITK
IAKKG

Sequences:

>Translated_245_residues
MKSRKKRLREVYVWELPVRIYHWVNALCIVILCVTGFIIADPPAIMSASEAYFSYWFGVVRFIHFVTAFVFFFNFVFRLY
WGFVGNRYARWNNFIPLKKSQWKEVLEVIKVDILMIKNKPVDSIGHNALASLIYFGTFWAFLLQSITGFGLYAKMSQSFF
PQLFAWTVPLMGGDLMARQIHHFLMWFFILFAIVHIYLVFYHDYIEQRGETSSIIGGWKFIEEDIADKEEVTETAETITK
IAKKG
>Mature_245_residues
MKSRKKRLREVYVWELPVRIYHWVNALCIVILCVTGFIIADPPAIMSASEAYFSYWFGVVRFIHFVTAFVFFFNFVFRLY
WGFVGNRYARWNNFIPLKKSQWKEVLEVIKVDILMIKNKPVDSIGHNALASLIYFGTFWAFLLQSITGFGLYAKMSQSFF
PQLFAWTVPLMGGDLMARQIHHFLMWFFILFAIVHIYLVFYHDYIEQRGETSSIIGGWKFIEEDIADKEEVTETAETITK
IAKKG

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=241, Percent_Identity=33.6099585062241, Blast_Score=127, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 28827; Mature: 28827

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS00882 NI_HGENASE_CYTB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCC
>Mature Secondary Structure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HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7966281 [H]