Click here to switch to the map view.

The map label for this gene is hupD [H]

Identifier: 150008432

GI number: 150008432

Start: 2163330

End: 2163809

Strand: Direct

Name: hupD [H]

Synonym: BDI_1814

Alternate gene names: 150008432

Gene position: 2163330-2163809 (Clockwise)

Preceding gene: 150008431

Following gene: 150008439

Centisome position: 44.96

GC content: 49.17

Gene sequence:

>480_bases
ATGAAAGCGGAGAAGGAAACATTAGTATTAGGAGTAGGCAATTTATTGCTGAAAGACGAAGGGGTAGGCATACACGTTAT
CAAGGCTTTAGAAAACGAGAAGCTCCCGGCTCACGTCCATTTGATGGACGGGGGCACGGGAGGGCTTCATTTATTAAGTT
GGCTGCAAGGATATGACCGTATCATCATGATCGATGCCACGCTGGATAATAACCCTCCGGGCACCGTCCGTCTGATCCAA
CCTCGTTACGCTACCGACTTTCCCCCGCTTATGAGCGCCCACGAGATCGGTCTAAAAGATATGATCGACGCCATGATCCT
GACCGACGATCTCCCGGAAACCCATCTCATTGTCATCTCCGCCCTCAATATCAACGAGGTCGGAATGGATCTGACACCCG
AGGTAAAAGCGGCGGTTCCGAAAGTGATCCGGATGATACAAGAGATTATTTCAATACATAATAGAGCATACCGGCAATAG

Upstream 100 bases:

>100_bases
CGTCCATCATCGGTGGCTGGAAGTTTATCGAGGAAGACATAGCGGACAAGGAAGAGGTAACCGAGACTGCCGAGACTATC
ACTAAGATCGCTAAAAAAGG

Downstream 100 bases:

>100_bases
CGGCCCCAGCTATCGGCCCTAAAACAGGTACCCAAGCATACTCCCAATGGCTGCTGCCTTTTCCCTTGATCGGCAAAATA
AAGTGTATGAACCGGGGAGC

Product: Ni,Fe-hydrogenase maturation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKAEKETLVLGVGNLLLKDEGVGIHVIKALENEKLPAHVHLMDGGTGGLHLLSWLQGYDRIIMIDATLDNNPPGTVRLIQ
PRYATDFPPLMSAHEIGLKDMIDAMILTDDLPETHLIVISALNINEVGMDLTPEVKAAVPKVIRMIQEIISIHNRAYRQ

Sequences:

>Translated_159_residues
MKAEKETLVLGVGNLLLKDEGVGIHVIKALENEKLPAHVHLMDGGTGGLHLLSWLQGYDRIIMIDATLDNNPPGTVRLIQ
PRYATDFPPLMSAHEIGLKDMIDAMILTDDLPETHLIVISALNINEVGMDLTPEVKAAVPKVIRMIQEIISIHNRAYRQ
>Mature_159_residues
MKAEKETLVLGVGNLLLKDEGVGIHVIKALENEKLPAHVHLMDGGTGGLHLLSWLQGYDRIIMIDATLDNNPPGTVRLIQ
PRYATDFPPLMSAHEIGLKDMIDAMILTDDLPETHLIVISALNINEVGMDLTPEVKAAVPKVIRMIQEIISIHNRAYRQ

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=142, Percent_Identity=34.5070422535211, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 17570; Mature: 17570

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEKETLVLGVGNLLLKDEGVGIHVIKALENEKLPAHVHLMDGGTGGLHLLSWLQGYDR
CCCCCCEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCE
IIMIDATLDNNPPGTVRLIQPRYATDFPPLMSAHEIGLKDMIDAMILTDDLPETHLIVIS
EEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
ALNINEVGMDLTPEVKAAVPKVIRMIQEIISIHNRAYRQ
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKAEKETLVLGVGNLLLKDEGVGIHVIKALENEKLPAHVHLMDGGTGGLHLLSWLQGYDR
CCCCCCEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCE
IIMIDATLDNNPPGTVRLIQPRYATDFPPLMSAHEIGLKDMIDAMILTDDLPETHLIVIS
EEEEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
ALNINEVGMDLTPEVKAAVPKVIRMIQEIISIHNRAYRQ
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8125335 [H]