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The map label for this gene is rpoE [C]

Identifier: 150007250

GI number: 150007250

Start: 696349

End: 696921

Strand: Reverse

Name: rpoE [C]

Synonym: BDI_0595

Alternate gene names: 150007250

Gene position: 696921-696349 (Counterclockwise)

Preceding gene: 150007251

Following gene: 150007247

Centisome position: 14.48

GC content: 47.47

Gene sequence:

>573_bases
GTGGACGAGAACGCAGAACGAATTTCACTAGAACTTATCGCAGGAGACGAACAAGCGTTCGACACCGTGTACAAACAATA
TTACCGGGGATTGTGCGCCTTCGCCTCCCAATATGTAACAGTACCAGAATCGGAGGAGATCGTACAAGACGTGATGATGT
GGCTGTGGGAAAACCGAAAATCCCTAGTAGCGGACATGTCTCTGAAATCACTCCTCTTCACGATTGTCCGCAATAAATGC
CTCAATACGATCAGCCACATACAGGTTAAGCAACAAGTGCACGAGAGACTGTACGCCAAGTTCCAAGAGCAATTCGAGAA
TCCTGATTTTTATATAGGAGAACTGATGGCCTTGGCCTCCAAGGCCATCCGGGAGCTCCCGGATGAATACCGTAAGGCAT
TCGAGATGAACCGTTTCGAGGAAATGACCTACAACGAGATCGCCGAGCGGACAGGCGTATCCCCAAAAACAATCGCATAC
CGCATCTCTCAAGCGCTCAAGATATTACGGACGAAATTAAAGGACTATATCCCTTTATTGGTATGGCTGCTTTACGAACA
AACACGCTCATAA

Upstream 100 bases:

>100_bases
GGAAGCCGTAGCCAACCAAGGAAAGAAAAAGTAGCGGGATTCATGCCTCTTATCCGGAATTATTCATTAAGTTTGCAACC
AAACAAACTTAAACACTATT

Downstream 100 bases:

>100_bases
CGGAGGAAGCATCCTACCGCCATGAGCGTTTTTTTAATGAGTCAAAAGACTTATTTCACGAACGGTGCTTTCAATAAATA
ATCCACGCAGCCTTTCACGC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor; Transcriptional Regulator LuxR Family; ECF-Type RNA Polymerase Sigma Factor; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; ECF Sigma Factor; Xin-Antitoxin System Toxin Component HipA Family; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDENAERISLELIAGDEQAFDTVYKQYYRGLCAFASQYVTVPESEEIVQDVMMWLWENRKSLVADMSLKSLLFTIVRNKC
LNTISHIQVKQQVHERLYAKFQEQFENPDFYIGELMALASKAIRELPDEYRKAFEMNRFEEMTYNEIAERTGVSPKTIAY
RISQALKILRTKLKDYIPLLVWLLYEQTRS

Sequences:

>Translated_190_residues
MDENAERISLELIAGDEQAFDTVYKQYYRGLCAFASQYVTVPESEEIVQDVMMWLWENRKSLVADMSLKSLLFTIVRNKC
LNTISHIQVKQQVHERLYAKFQEQFENPDFYIGELMALASKAIRELPDEYRKAFEMNRFEEMTYNEIAERTGVSPKTIAY
RISQALKILRTKLKDYIPLLVWLLYEQTRS
>Mature_190_residues
MDENAERISLELIAGDEQAFDTVYKQYYRGLCAFASQYVTVPESEEIVQDVMMWLWENRKSLVADMSLKSLLFTIVRNKC
LNTISHIQVKQQVHERLYAKFQEQFENPDFYIGELMALASKAIRELPDEYRKAFEMNRFEEMTYNEIAERTGVSPKTIAY
RISQALKILRTKLKDYIPLLVWLLYEQTRS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22473; Mature: 22473

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENAERISLELIAGDEQAFDTVYKQYYRGLCAFASQYVTVPESEEIVQDVMMWLWENRK
CCCCHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SLVADMSLKSLLFTIVRNKCLNTISHIQVKQQVHERLYAKFQEQFENPDFYIGELMALAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KAIRELPDEYRKAFEMNRFEEMTYNEIAERTGVSPKTIAYRISQALKILRTKLKDYIPLL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VWLLYEQTRS
HHHHHHHHCC
>Mature Secondary Structure
MDENAERISLELIAGDEQAFDTVYKQYYRGLCAFASQYVTVPESEEIVQDVMMWLWENRK
CCCCHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
SLVADMSLKSLLFTIVRNKCLNTISHIQVKQQVHERLYAKFQEQFENPDFYIGELMALAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KAIRELPDEYRKAFEMNRFEEMTYNEIAERTGVSPKTIAYRISQALKILRTKLKDYIPLL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VWLLYEQTRS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA