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The map label for this gene is rpoE [H]

Identifier: 150005851

GI number: 150005851

Start: 4182865

End: 4183332

Strand: Reverse

Name: rpoE [H]

Synonym: BVU_3347

Alternate gene names: 150005851

Gene position: 4183332-4182865 (Counterclockwise)

Preceding gene: 150005852

Following gene: 150005850

Centisome position: 81.02

GC content: 41.03

Gene sequence:

>468_bases
GTGCAAGAAGAATTACTTCGGTTTGCATACAAACTCACAGCCGACCGTGAGGAGGCTAATGACCTGCTACAAGAAACTTC
ATTGAAAGCGCTGGATAATGAAGACAAGTATATCCCCGATACAAACTTTAAGGGATGGATGTATACCATTATGCGTAACA
TCTTTATAAACAATTATAGGAAAATCGTGCGTGACCAGACATTTGTGGACCATACAGACAATCTCTACCATTTAAGTATG
CCTCAGGATTCCGGCTTTGATAGTACCGAGGGAGCTTATGACATGAAAGAAATACATCGTATAGTCGGTTTGCTTCCTAA
AGAATACCGTATTCCATTCGCTATGCATGTGTCGGGATTTAAATATCGTGAGATTGCCGAAAAGCTGGGATTGCCGTTGG
GTACTGTAAAAAGCAGAATTTTTTTTACCAGACAACGCTTGCAGGGACAGCTCCGTGATTTTGTATAA

Upstream 100 bases:

>100_bases
AATTCTTCATGTTCAGACTGGCTAGGCTATACGCTTAAAAGAAAGCTTACCAACCAGGAAAATCCGCTGACCCGTTAGTT
TTAAAAAGAACCTGCTGGGT

Downstream 100 bases:

>100_bases
TCCAAGGGGGAAAATTATCAAAAAGGTAGAGTGAAAATCTTTTGCTCTGCCTTTTTTGTTTTTGTTGGTTTACAATATGA
TATTAAACATGTTTTTGGAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MQEELLRFAYKLTADREEANDLLQETSLKALDNEDKYIPDTNFKGWMYTIMRNIFINNYRKIVRDQTFVDHTDNLYHLSM
PQDSGFDSTEGAYDMKEIHRIVGLLPKEYRIPFAMHVSGFKYREIAEKLGLPLGTVKSRIFFTRQRLQGQLRDFV

Sequences:

>Translated_155_residues
MQEELLRFAYKLTADREEANDLLQETSLKALDNEDKYIPDTNFKGWMYTIMRNIFINNYRKIVRDQTFVDHTDNLYHLSM
PQDSGFDSTEGAYDMKEIHRIVGLLPKEYRIPFAMHVSGFKYREIAEKLGLPLGTVKSRIFFTRQRLQGQLRDFV
>Mature_155_residues
MQEELLRFAYKLTADREEANDLLQETSLKALDNEDKYIPDTNFKGWMYTIMRNIFINNYRKIVRDQTFVDHTDNLYHLSM
PQDSGFDSTEGAYDMKEIHRIVGLLPKEYRIPFAMHVSGFKYREIAEKLGLPLGTVKSRIFFTRQRLQGQLRDFV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18379; Mature: 18379

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEELLRFAYKLTADREEANDLLQETSLKALDNEDKYIPDTNFKGWMYTIMRNIFINNYR
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KIVRDQTFVDHTDNLYHLSMPQDSGFDSTEGAYDMKEIHRIVGLLPKEYRIPFAMHVSGF
HHHHCCHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCEEEECCCC
KYREIAEKLGLPLGTVKSRIFFTRQRLQGQLRDFV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQEELLRFAYKLTADREEANDLLQETSLKALDNEDKYIPDTNFKGWMYTIMRNIFINNYR
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KIVRDQTFVDHTDNLYHLSMPQDSGFDSTEGAYDMKEIHRIVGLLPKEYRIPFAMHVSGF
HHHHCCHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCEEEECCCC
KYREIAEKLGLPLGTVKSRIFFTRQRLQGQLRDFV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]