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The map label for this gene is rpsU

Identifier: 150003404

GI number: 150003404

Start: 1121818

End: 1122009

Strand: Reverse

Name: rpsU

Synonym: BVU_0827

Alternate gene names: 150003404

Gene position: 1122009-1121818 (Counterclockwise)

Preceding gene: 150003409

Following gene: 150003403

Centisome position: 21.73

GC content: 36.46

Gene sequence:

>192_bases
ATGATTGTAGTACCAGTAAAAGAAGGCGAAAACATTGAAAAAGCGCTGAAGAAGTTCAAAAGAAAATTTGAGAAAACAGG
TGTTGTAAAAGAACTAAGAGCTAGACAGCAGTTCGACAAGCCGTCTGTATTGAACAGACTGAAAAGAGAACGTGCTATCT
ATGTTCAGAAACTTCAGCAAGTAGAAGAATAA

Upstream 100 bases:

>100_bases
ATTGCGGAAAGTTTTGTAAATAAAGAAAGTATGTGTAATTTTGCGCCGCAATTTGACTATCGGAAAATATTAATAACAAC
ATATTTAATAATTAAAAACA

Downstream 100 bases:

>100_bases
TTAAAAACTCGCACATTCTTTGAATAATTGAATTCTTTTTCATATATTCGTTGCTGAATTGATAAGCGACGTTTCTTATG
ATGACAGACTCTTTTTTGGA

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 63

Protein sequence:

>63_residues
MIVVPVKEGENIEKALKKFKRKFEKTGVVKELRARQQFDKPSVLNRLKRERAIYVQKLQQVEE

Sequences:

>Translated_63_residues
MIVVPVKEGENIEKALKKFKRKFEKTGVVKELRARQQFDKPSVLNRLKRERAIYVQKLQQVEE
>Mature_63_residues
MIVVPVKEGENIEKALKKFKRKFEKTGVVKELRARQQFDKPSVLNRLKRERAIYVQKLQQVEE

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_BACV8 (A6KYL2)

Other databases:

- EMBL:   CP000139
- RefSeq:   YP_001298148.1
- ProteinModelPortal:   A6KYL2
- SMR:   A6KYL2
- STRING:   A6KYL2
- GeneID:   5301794
- GenomeReviews:   CP000139_GR
- KEGG:   bvu:BVU_0827
- NMPDR:   fig|435590.6.peg.789
- eggNOG:   NOG87974
- HOGENOM:   HBG708268
- OMA:   AYFVKPS
- ProtClustDB:   PRK00270
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- PRINTS:   PR00976
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 7526; Mature: 7526

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVVPVKEGENIEKALKKFKRKFEKTGVVKELRARQQFDKPSVLNRLKRERAIYVQKLQQ
CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VEE
HCC
>Mature Secondary Structure
MIVVPVKEGENIEKALKKFKRKFEKTGVVKELRARQQFDKPSVLNRLKRERAIYVQKLQQ
CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VEE
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA