Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 150003403

GI number: 150003403

Start: 1120859

End: 1121740

Strand: Reverse

Name: xerC [H]

Synonym: BVU_0826

Alternate gene names: 150003403

Gene position: 1121740-1120859 (Counterclockwise)

Preceding gene: 150003404

Following gene: 150003402

Centisome position: 21.73

GC content: 39.12

Gene sequence:

>882_bases
ATGATGACAGACTCTTTTTTGGATTATCTTCGATTTGAAAAAAACTATTCTGAAAAAACAATAGTTAGTTATGGAATAGA
TTTGACCAAGTTCGAAGAATACTTCAAGGGGAAAGACGAGAAAGTCGATTTTACAACGGTAGATGCTGATTTGGTTCGTG
GTTGGGTGATGAACCTGATGGAGAATGGATATACATCTGCTTCTGTAAACCGAAAACTGAGTTCACTCCGGTCGTTTTAT
CGTTTCCTTCTAAAGAAAGGTGTGATAGAGGAGGATCCGATGTTGAAAATCATTGGACCGAAAAATAAGAAACCTCTTCC
TGTATTTCTAAAAGAACGTGAAATGGACCGACTCTTGGATGATGTTCCTTTTAAGGAGGATTTTACAGGTTGTCGGGATA
GAATGGTGTTGGAAATGTTTTATGCTACAGGCATGCGGCTTTCCGAGTTGATAGGGCTGAATGATGTGGATGTCGATTTT
TCTGCGTTTCTGATAAAAGTAACGGGAAAGAGAAATAAACAGCGTTTAATTCCTTTTGGAGAAGAATTGCGAAGGGCGAT
GTCTGTTTATCTGAAAATAAGAAATGAAGTGTTGCCTGGAAAGGCAGAGGCGTTTTTCGTCCTAAAAAACGGAAAACGGA
TGTATCCTGGAAAGGTGTATCTTTTAGTGAAACGGAACCTGTCAAAAGTGGTGTCGTTAAAAAAAAGAAGTCCGCATGTG
TTGAGGCATACTTTTGCAACTGCTATGTTGAATAATGAGGCAGAGTTGGGCGCAGTGAAGGAATTACTGGGTCATAGTAG
TCTGACTACAACGGAAATTTATACGCATACGACTTTTGAGGAACTTAAAAAAGTTTATGAACAAGCTCATCCAAGAGCGT
AA

Upstream 100 bases:

>100_bases
AACTTCAGCAAGTAGAAGAATAATTAAAAACTCGCACATTCTTTGAATAATTGAATTCTTTTTCATATATTCGTTGCTGA
ATTGATAAGCGACGTTTCTT

Downstream 100 bases:

>100_bases
AAAAGGAGGTATTTATGGAAGTTAGAATTCAAGCCATTCATTTCGATGCAACAGAAAAACTTCAGGATTTTATTCAGAAG
AAAACTGCTAAGTTAGAAAA

Product: tyrosine type site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MMTDSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENGYTSASVNRKLSSLRSFY
RFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDF
SAFLIKVTGKRNKQRLIPFGEELRRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHV
LRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA

Sequences:

>Translated_293_residues
MMTDSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENGYTSASVNRKLSSLRSFY
RFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDF
SAFLIKVTGKRNKQRLIPFGEELRRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHV
LRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA
>Mature_293_residues
MMTDSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENGYTSASVNRKLSSLRSFY
RFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDF
SAFLIKVTGKRNKQRLIPFGEELRRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHV
LRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=36.1774744027304, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1790244, Length=294, Percent_Identity=34.3537414965986, Blast_Score=164, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34002; Mature: 34002

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTDSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLM
CCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
ENGYTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLD
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
DVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCH
EELRRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHV
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCCEEEEEEEHHHHHHHHHHHCCCHH
LRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEHEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMTDSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLM
CCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
ENGYTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLD
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
DVPFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCH
EELRRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHV
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCCEEEEEEEHHHHHHHHHHHCCCHH
LRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEHEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]