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The map label for this gene is dmsB [H]

Identifier: 148828211

GI number: 148828211

Start: 1639862

End: 1640479

Strand: Reverse

Name: dmsB [H]

Synonym: CGSHiGG_08865

Alternate gene names: 148828211

Gene position: 1640479-1639862 (Counterclockwise)

Preceding gene: 148828212

Following gene: 148828210

Centisome position: 86.93

GC content: 39.81

Gene sequence:

>618_bases
ATGGAACAATATGGTTTTTATTTTGATTCTGAACGCTGCACAGGCTGTAAAACTTGTGAATTAGCCTGTAAGGATTACAA
AGATCTTGGCACAGAAGTCAATTTTCGTCGTATTTATGAATATACAGGTGGTCAGTGGAATCAACAAGCAGATGGATGCT
GGCATCAAAATATATTTGCTTATTATATGTCTATTTCTTGTAATCATTGTGCAGATCCTGCTTGTACAAAAGTTTGCCCA
ACTGGTGCAATGCACAAAAATGCAGATGGTTTCGTGATCGTCAATGAAGAAATTTGTATCGGTTGTCGTTATTGCCATAT
GGCATGTCCTTATGATGCACCGCAATATGATGCACAAAAAGGTCATATGACAAAATGTGATGGATGTTATTCTCGTATAA
AATCAGGTCAAAAACCGATTTGTGTTGATGCCTGCCCACTACGCGCATTGGATTTCGCTCCTATTGATGAACTTCGAGCA
AAATACGGCACTCAAGCCTCCATCGCACCACTACCACCGGCTGATATCACTCAACCAAATTTAGTGGTAAAACCCAATAA
ACACGCTCGTTTAAGTAGCGATACAAGTGGGTTCTTAGGAAACCCAAGAGAGGTGTAA

Upstream 100 bases:

>100_bases
TGCATTAATGTACTTACGACACAACGCCCATCACCGCTTGCGAAAGGTAATCCGCAACATTCTAATTTAGTTCAAGTGGA
ACGTTTGTAGGGGGATAATT

Downstream 100 bases:

>100_bases
GATGAATACAGGATTATATGAACTGCCACTAGTATTTTTTACAGTTTTGGCACAAAGTGCGGTCGGTGCTTGGCTTGTTT
TCACATTTGTACTATTAAAT

Product: anaerobic dimethyl sulfoxide reductase chain B

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRIKSGQKPICVDACPLRALDFAPIDELRA
KYGTQASIAPLPPADITQPNLVVKPNKHARLSSDTSGFLGNPREV

Sequences:

>Translated_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRIKSGQKPICVDACPLRALDFAPIDELRA
KYGTQASIAPLPPADITQPNLVVKPNKHARLSSDTSGFLGNPREV
>Mature_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRIKSGQKPICVDACPLRALDFAPIDELRA
KYGTQASIAPLPPADITQPNLVVKPNKHARLSSDTSGFLGNPREV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=203, Percent_Identity=71.9211822660099, Blast_Score=330, Evalue=4e-92,
Organism=Escherichia coli, GI1787122, Length=203, Percent_Identity=71.9211822660099, Blast_Score=328, Evalue=2e-91,
Organism=Escherichia coli, GI1790326, Length=166, Percent_Identity=32.5301204819277, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=32.7044025157233, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789370, Length=185, Percent_Identity=32.4324324324324, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367345, Length=195, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI226510944, Length=158, Percent_Identity=34.8101265822785, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787740, Length=127, Percent_Identity=32.2834645669291, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787478, Length=122, Percent_Identity=33.6065573770492, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI2367245, Length=163, Percent_Identity=30.6748466257669, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789067, Length=188, Percent_Identity=29.7872340425532, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788811, Length=155, Percent_Identity=29.6774193548387, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082179, Length=162, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787963, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22885; Mature: 22885

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCEEE
YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK
EEEEECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEHEEECCCCCCCCCCCC
GHMTKCDGCYSRIKSGQKPICVDACPLRALDFAPIDELRAKYGTQASIAPLPPADITQPN
CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
LVVKPNKHARLSSDTSGFLGNPREV
EEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHCEEE
YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK
EEEEECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEHEEECCCCCCCCCCCC
GHMTKCDGCYSRIKSGQKPICVDACPLRALDFAPIDELRAKYGTQASIAPLPPADITQPN
CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
LVVKPNKHARLSSDTSGFLGNPREV
EEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8635740 [H]