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The map label for this gene is sgbU [H]

Identifier: 148828192

GI number: 148828192

Start: 1619891

End: 1620751

Strand: Reverse

Name: sgbU [H]

Synonym: CGSHiGG_08750

Alternate gene names: 148828192

Gene position: 1620751-1619891 (Counterclockwise)

Preceding gene: 148828193

Following gene: 148828191

Centisome position: 85.88

GC content: 33.22

Gene sequence:

>861_bases
ATGAAAAAATATAAAATCGGTATTTATGAGAAAGCATTACCGAAAAATATTACTTGGCAAGAGCGTTTATCTCTCGCTAA
AGCATGTGGCTTTGAATTTATTGAAATGTCTATTGATGAAAGCAATGACAGATTATCTCGTTTAAACTGGACAAAATCAG
AAAGAATAGCTCTACATCAATCTATTATTCAAAGTGGAATAACTATCCCCTCTATGTGCTTGTCGGCTCATCGTCGCTTC
CCTTTTGGTAGTAAAGACAAAAAAATTCGTCAAAAATCCTTTGAAATTATGGAAAAAGCCATTGATCTTTCGGTGAATTT
AGGCATTAGAACCATACAGTTAGCAGGTTATGATGTGTATTACGAAAAACAAGATGAAGAAACAATCAAATATTTTCAGG
AGGGTATTGAATTCGCTGTAACTCTTGCTGCATCAGCTCAAGTTACTCTTGCGGTCGAAATTATGGATACGCCTTTTATG
AGTTCTATTTCTCGTTGGAAAAAATGGGATACCATCATTAATTCTCCGTGGTTTACCGTTTACCCAGACATAGGAAATTT
AAGTGCTTGGAATAATAATATTGAAGAAGAACTTACATTAGGCATAGATAAAATATCAGCTATTCATTTAAAAGATACTT
ACCCCGTCACTGAAACAAGTAAAGGACAATTTAGAGATGTACCTTTTGGTCAAGGATGTGTTGATTTTGTTCATTTTTTT
AGCCTATTAAAAAAATTGAATTACAGAGGTGCATTCTTAATTGAAATGTGGACAGAAAAAAATGAAGAACCCTTATTAGA
AATTATTCAAGCTCGTAAGTGGATAGTTCAACAAATGGAAAAGGCAGGATTATTATGTTAG

Upstream 100 bases:

>100_bases
TTACCTGATAAAAATCAATATAGTAAGTATCAGCATAAATATCATCGCTATTTAAAGTTTATTGAAGCATTAAAAAATTT
AGACTAAAAAAGGAAAAGTT

Downstream 100 bases:

>100_bases
CACAATTAAAAAAAGAGGTTTTTGAAGCCAATTTAGCATTACCCAAACATCATTTAGTGACTTTTACTTGGGGTAATGTT
TCAGCAATTGATCGTGAAAA

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKKYKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC

Sequences:

>Translated_286_residues
MKKYKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
>Mature_286_residues
MKKYKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=65.3846153846154, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=53.169014084507, Blast_Score=334, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.-.-.-

Molecular weight: Translated: 33089; Mature: 33089

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQ
CCCEEECCHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHH
SIIQSGITIPSMCLSAHRRFPFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECCEEEEEEECEEEE
YEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFMSSISRWKKWDTIINSPWFTV
EECCCHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
YPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
CCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKYKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQ
CCCEEECCHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHH
SIIQSGITIPSMCLSAHRRFPFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECCEEEEEEECEEEE
YEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFMSSISRWKKWDTIINSPWFTV
EECCCHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
YPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
CCCCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]