Click here to switch to the map view.

The map label for this gene is lyx [H]

Identifier: 148828193

GI number: 148828193

Start: 1620765

End: 1622222

Strand: Reverse

Name: lyx [H]

Synonym: CGSHiGG_08755

Alternate gene names: 148828193

Gene position: 1622222-1620765 (Counterclockwise)

Preceding gene: 148828194

Following gene: 148828192

Centisome position: 85.96

GC content: 34.22

Gene sequence:

>1458_bases
ATGCATTACTATCTTGGTATTGATTGTGGCGGTACGTTTATAAAAGCAGCGATTTTTGATCAAAATGGTACACTACAAAG
TATTGCACGCAGAAATATTCCTATTATTAGTGAAAAACCCGGTTATGCTGAACGGGATATGGATGAATTATGGAATCTTT
GCGCGCAAGTTATTCAGAAAACTATAAGACAAAGTAGTATTTTGCCTCAACAAATAAAAGCTATTGGCATTTCTGCACAA
GGTAAAGGTGCGTTTTTTTTAGATAAAGATAATAAACCATTAGGGCGAGCAATCTTATCATCTGACCAACGAGCATACGA
AATTGTGCAATGTTGGCAAAAAGAAAACATACTACAAAAATTTTATCCTATCACACTCCAAACTCTTTGGATGGGACATC
CTGTCTCGATTTTACGCTGGATAAAAGAAAATGAACCCAGTCGATATGAGCAAATTCATACGATTTTAATGTCTCACGAT
TACCTTCGATTTTGTTTAACTGAAAAATTATATTGTGAAGAAACAAATATTTCTGAGTCTAATTTTTACAATGTGCGAGA
AGGAAAATATGACATTCAGTTAGCTAAGTTATTCGGTATAACAGAATGCATAGATAAATTACCTCCAATCATTAAATCAA
ATAAAATTGCAGGATATGTAACCTCCAGAGCAGCAGAGCAATCTGGTTTGGTAGAAGGAATACCTGTTGTTGGAGGATTA
TTTGATGTGGTATCCACTGCATTATGCGCTGATTTGAAGGATGATCAACATCTTAATGTTGTATTAGGGACGTGGTCTGT
TGTTAGTGGGGTGACCCATTATATTGATGATAACCAAACAATTCCTTTTGTGTATGGCAAATATCCAGAAAAAAATAAAT
TCATTATTCATGAAGCAAGTCCAACATCAGCAGGTAATTTAGAGTGGTTTGTAAATCAATTTAATTTGCCTAACTATGAT
GACATTAATCACGAAATTGCAAAACTTAAACCCGCAAGTAGCTCAGTCTTATTTGCACCTTTTTTATATGGCTCTAATGC
TAAGTTAGGTATGCAAGCAGGGTTTTATGGAATTCAATCTCATCATACCCAAATACATTTACTCCAAGCAATTTATGAAG
GTGTGATATTTAGCCTAATGTCTCATTTAGAAAGAATGCAAGTACGTTTTCCTAATGCAAGCACGCTTCGCGTAACTGGT
GGACCAGCAAAATCAGAAGTTTGGATGCAAATGCTTGCAGATATAAGTGGTATGAGACTAGAAATCCCTAATATTGAAGA
AACTGGTTGCTTAGGTGCAGCATTGATGGCGATGCAAGCCGAAAGTGCGGTTGAAATTTCTCAAATATTAAATATTGATA
GGAAAATATTTTTACCTGATAAAAATCAATATAGTAAGTATCAGCATAAATATCATCGCTATTTAAAGTTTATTGAAGCA
TTAAAAAATTTAGACTAA

Upstream 100 bases:

>100_bases
GGCGATGATTTATTGAAGAAAGTAGATGCATTATCGGAATAGTCAATAGGCTGGATTTTACATAATAAAAATCCAGCCCA
TAAAAAACTAAGGAGAATAT

Downstream 100 bases:

>100_bases
AAAAGGAAAAGTTATGAAAAAATATAAAATCGGTATTTATGAGAAAGCATTACCGAAAAATATTACTTGGCAAGAGCGTT
TATCTCTCGCTAAAGCATGT

Product: L-xylulose kinase

Products: NA

Alternate protein names: L-xylulokinase [H]

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MHYYLGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQSSILPQQIKAIGISAQ
GKGAFFLDKDNKPLGRAILSSDQRAYEIVQCWQKENILQKFYPITLQTLWMGHPVSILRWIKENEPSRYEQIHTILMSHD
YLRFCLTEKLYCEETNISESNFYNVREGKYDIQLAKLFGITECIDKLPPIIKSNKIAGYVTSRAAEQSGLVEGIPVVGGL
FDVVSTALCADLKDDQHLNVVLGTWSVVSGVTHYIDDNQTIPFVYGKYPEKNKFIIHEASPTSAGNLEWFVNQFNLPNYD
DINHEIAKLKPASSSVLFAPFLYGSNAKLGMQAGFYGIQSHHTQIHLLQAIYEGVIFSLMSHLERMQVRFPNASTLRVTG
GPAKSEVWMQMLADISGMRLEIPNIEETGCLGAALMAMQAESAVEISQILNIDRKIFLPDKNQYSKYQHKYHRYLKFIEA
LKNLD

Sequences:

>Translated_485_residues
MHYYLGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQSSILPQQIKAIGISAQ
GKGAFFLDKDNKPLGRAILSSDQRAYEIVQCWQKENILQKFYPITLQTLWMGHPVSILRWIKENEPSRYEQIHTILMSHD
YLRFCLTEKLYCEETNISESNFYNVREGKYDIQLAKLFGITECIDKLPPIIKSNKIAGYVTSRAAEQSGLVEGIPVVGGL
FDVVSTALCADLKDDQHLNVVLGTWSVVSGVTHYIDDNQTIPFVYGKYPEKNKFIIHEASPTSAGNLEWFVNQFNLPNYD
DINHEIAKLKPASSSVLFAPFLYGSNAKLGMQAGFYGIQSHHTQIHLLQAIYEGVIFSLMSHLERMQVRFPNASTLRVTG
GPAKSEVWMQMLADISGMRLEIPNIEETGCLGAALMAMQAESAVEISQILNIDRKIFLPDKNQYSKYQHKYHRYLKFIEA
LKNLD
>Mature_485_residues
MHYYLGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQSSILPQQIKAIGISAQ
GKGAFFLDKDNKPLGRAILSSDQRAYEIVQCWQKENILQKFYPITLQTLWMGHPVSILRWIKENEPSRYEQIHTILMSHD
YLRFCLTEKLYCEETNISESNFYNVREGKYDIQLAKLFGITECIDKLPPIIKSNKIAGYVTSRAAEQSGLVEGIPVVGGL
FDVVSTALCADLKDDQHLNVVLGTWSVVSGVTHYIDDNQTIPFVYGKYPEKNKFIIHEASPTSAGNLEWFVNQFNLPNYD
DINHEIAKLKPASSSVLFAPFLYGSNAKLGMQAGFYGIQSHHTQIHLLQAIYEGVIFSLMSHLERMQVRFPNASTLRVTG
GPAKSEVWMQMLADISGMRLEIPNIEETGCLGAALMAMQAESAVEISQILNIDRKIFLPDKNQYSKYQHKYHRYLKFIEA
LKNLD

Specific function: L-lyxose utilization. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Escherichia coli, GI1790005, Length=486, Percent_Identity=53.7037037037037, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI1789987, Length=503, Percent_Identity=25.2485089463221, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787789, Length=515, Percent_Identity=22.1359223300971, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1789168, Length=449, Percent_Identity=21.6035634743875, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.53 [H]

Molecular weight: Translated: 54948; Mature: 54948

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYYLGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQK
CEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
TIRQSSILPQQIKAIGISAQGKGAFFLDKDNKPLGRAILSSDQRAYEIVQCWQKENILQK
HHHHHCCCHHHHHHEECCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
FYPITLQTLWMGHPVSILRWIKENEPSRYEQIHTILMSHDYLRFCLTEKLYCEETNISES
HCCHHHEEHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
NFYNVREGKYDIQLAKLFGITECIDKLPPIIKSNKIAGYVTSRAAEQSGLVEGIPVVGGL
CCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHH
FDVVSTALCADLKDDQHLNVVLGTWSVVSGVTHYIDDNQTIPFVYGKYPEKNKFIIHEAS
HHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCCCEECEEECCCCCCCCEEEEECC
PTSAGNLEWFVNQFNLPNYDDINHEIAKLKPASSSVLFAPFLYGSNAKLGMQAGFYGIQS
CCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCHHCCCCCHHC
HHTQIHLLQAIYEGVIFSLMSHLERMQVRFPNASTLRVTGGPAKSEVWMQMLADISGMRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHCCCCCEE
EIPNIEETGCLGAALMAMQAESAVEISQILNIDRKIFLPDKNQYSKYQHKYHRYLKFIEA
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
LKNLD
HHCCC
>Mature Secondary Structure
MHYYLGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQK
CEEEEEEECCCCEEEEEEECCCCCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
TIRQSSILPQQIKAIGISAQGKGAFFLDKDNKPLGRAILSSDQRAYEIVQCWQKENILQK
HHHHHCCCHHHHHHEECCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
FYPITLQTLWMGHPVSILRWIKENEPSRYEQIHTILMSHDYLRFCLTEKLYCEETNISES
HCCHHHEEHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
NFYNVREGKYDIQLAKLFGITECIDKLPPIIKSNKIAGYVTSRAAEQSGLVEGIPVVGGL
CCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHH
FDVVSTALCADLKDDQHLNVVLGTWSVVSGVTHYIDDNQTIPFVYGKYPEKNKFIIHEAS
HHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCCCEECEEECCCCCCCCEEEEECC
PTSAGNLEWFVNQFNLPNYDDINHEIAKLKPASSSVLFAPFLYGSNAKLGMQAGFYGIQS
CCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCHHCCCCCHHC
HHTQIHLLQAIYEGVIFSLMSHLERMQVRFPNASTLRVTGGPAKSEVWMQMLADISGMRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHHCCCCCEE
EIPNIEETGCLGAALMAMQAESAVEISQILNIDRKIFLPDKNQYSKYQHKYHRYLKFIEA
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
LKNLD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]