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The map label for this gene is ybaV [C]

Identifier: 148828176

GI number: 148828176

Start: 1601892

End: 1602239

Strand: Direct

Name: ybaV [C]

Synonym: CGSHiGG_08640

Alternate gene names: 148828176

Gene position: 1601892-1602239 (Clockwise)

Preceding gene: 148828175

Following gene: 148828177

Centisome position: 84.88

GC content: 38.51

Gene sequence:

>348_bases
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Upstream 100 bases:

>100_bases
GATCGCAAAAGTGCGGTCAGTTTCTTGAGGGTTTTTGCAAGGCAGGAAAAAATAGGTGTGTTGATTGCTGATCAACGATT
CATATTATAAGGAAACCTCT

Downstream 100 bases:

>100_bases
TTTTCTAACCTCCAATGAATGCCCTGTTTCACAGGGCTTTTTTATTTTATACTAAAAATAATTCAACATTCATTTCAGCG
ATTCTAGCTTGAGCATTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Sequences:

>Translated_115_residues
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF
>Mature_115_residues
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=116, Percent_Identity=37.0689655172414, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12355; Mature: 12355

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ASEIQKSLTGIGAKKAEAIVQYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ASEIQKSLTGIGAKKAEAIVQYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]