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The map label for this gene is yijC [C]

Identifier: 148827762

GI number: 148827762

Start: 1116552

End: 1117169

Strand: Reverse

Name: yijC [C]

Synonym: CGSHiGG_06125

Alternate gene names: 148827762

Gene position: 1117169-1116552 (Counterclockwise)

Preceding gene: 148827763

Following gene: 148827760

Centisome position: 59.2

GC content: 41.26

Gene sequence:

>618_bases
ATGGCTGGTGTTCGTGCTGTTCAAAAAGAAAAGACTCGTCGCGCTTTAGTGGATGCAGCATTTAATCAACTTAGCGCAGA
AAAAAGTTTTTCTAATTTAAGTTTACGAGAAGTGGCGCGCGAGGCTGGTATTGCGCCTACCTCTTTCTATCGTCATTTTA
GTGATATGGATGAACTTGGCTTAGAAATGGTGGATGAAGCAGGTTTGATGTTGCGCCAATTAATGCGTCAAGCGCGTAAA
CGCATTGATGCGGGCGGTAGTGTTATTTCTGTTTCTGTGGATACATTTTTTGAATTTATTACTAATAGCACGAACGTTTT
TCGCTTGTTATTACGCGAAAGTTCAGGCACTTCTCAAGCTTTTCGTACTGCGGCAGCACGCGAAATTAAGCATTTTGTTG
ATGAGTTAGCAGAATATATTTCCTACAAACATCAATATTCGCAATATGTTGCTTATGTTCAAGCGGAAGGCATCGTAACA
ATCGTATTCACTGCAGGGGCGAATGCTTTAGATATGAGTAAAGCTGAGCGTGAGCAACTTAAAGCTCGTGTGATTTTGCA
GTTGAGAATGCTTGCAAAAGGTGCTGATTTTGCAGCGAATAAGGAAAGAGGCAAGTAA

Upstream 100 bases:

>100_bases
CGTTGGTTTATCGTCCTGGTTCGCCATTACGTAATCGTTATGAGCGTGTGGCAAGTGCGGTCAGCGATGAAGTTAAATCT
ATTCTAGATGGGTTGAAATA

Downstream 100 bases:

>100_bases
GATAGTTTATATCTAGCCTATTAGTTTTCTCTTTGTGCTTAGGTATTTGCTATCTTTTATTCTTCCAAGTTATTTTTCAT
ACCAAATTTTATTCACATAA

Product: DNA-binding transcriptional repressor FabR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MAGVRAVQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAPTSFYRHFSDMDELGLEMVDEAGLMLRQLMRQARK
RIDAGGSVISVSVDTFFEFITNSTNVFRLLLRESSGTSQAFRTAAAREIKHFVDELAEYISYKHQYSQYVAYVQAEGIVT
IVFTAGANALDMSKAEREQLKARVILQLRMLAKGADFAANKERGK

Sequences:

>Translated_205_residues
MAGVRAVQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAPTSFYRHFSDMDELGLEMVDEAGLMLRQLMRQARK
RIDAGGSVISVSVDTFFEFITNSTNVFRLLLRESSGTSQAFRTAAAREIKHFVDELAEYISYKHQYSQYVAYVQAEGIVT
IVFTAGANALDMSKAEREQLKARVILQLRMLAKGADFAANKERGK
>Mature_204_residues
AGVRAVQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAPTSFYRHFSDMDELGLEMVDEAGLMLRQLMRQARKR
IDAGGSVISVSVDTFFEFITNSTNVFRLLLRESSGTSQAFRTAAAREIKHFVDELAEYISYKHQYSQYVAYVQAEGIVTI
VFTAGANALDMSKAEREQLKARVILQLRMLAKGADFAANKERGK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI145693209, Length=203, Percent_Identity=66.5024630541872, Blast_Score=271, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y570_HAEIN (P44757)

Other databases:

- EMBL:   L42023
- PIR:   H64154
- RefSeq:   NP_438727.1
- ProteinModelPortal:   P44757
- GeneID:   949502
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0570
- TIGR:   HI_0570
- HOGENOM:   HBG530074
- OMA:   TFMEVLE
- ProtClustDB:   PRK11202
- BioCyc:   HINF71421:HI_0570-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 22942; Mature: 22811

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVRAVQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAPTSFYRHFSDMDELG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
LEMVDEAGLMLRQLMRQARKRIDAGGSVISVSVDTFFEFITNSTNVFRLLLRESSGTSQA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCCCHHHH
FRTAAAREIKHFVDELAEYISYKHQYSQYVAYVQAEGIVTIVFTAGANALDMSKAEREQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH
KARVILQLRMLAKGADFAANKERGK
HHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGVRAVQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAPTSFYRHFSDMDELG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
LEMVDEAGLMLRQLMRQARKRIDAGGSVISVSVDTFFEFITNSTNVFRLLLRESSGTSQA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHCCCCHHHH
FRTAAAREIKHFVDELAEYISYKHQYSQYVAYVQAEGIVTIVFTAGANALDMSKAEREQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH
KARVILQLRMLAKGADFAANKERGK
HHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800