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The map label for this gene is gyrB [C]

Identifier: 148827760

GI number: 148827760

Start: 1113600

End: 1115912

Strand: Reverse

Name: gyrB [C]

Synonym: CGSHiGG_06115

Alternate gene names: 148827760

Gene position: 1115912-1113600 (Counterclockwise)

Preceding gene: 148827762

Following gene: 148827759

Centisome position: 59.13

GC content: 41.72

Gene sequence:

>2313_bases
ATGTTAAATCAACAAATTAGCCAAATTATTGCGGCTGAATTAACCGTTCAACCCCAACAAATCTTTGCAGCCATTCAATT
ATTAGATGATGGCAACACCATTCCATTTATCGCCCGTTATCGTAAAGAAGCCACAGGGGGCTTAGATGACACCCAGCTTC
GCCATTTTGAAACCCGTTTAATTTATTTACGTGAATTAGAAGAACGTCGTCAAACTATTTTGAAATCTATTGAAGAGCAA
GGAAAATTGACCAATGAATTGCGTGACAAAATCCATGCGACACAAAGCAAAACCGAATTAGAGGATTTATATTTACCGTA
CAAACCAAAACGTCGCACCAAAGGGCAAATTGCCATTGAAGCTGGTCTTGAGCCATTGGCTAATTTACTTTGGAATGAGC
CAAAAAATAATCCAGAATCAACCGCTCTTTCCTTTGTGGATGCTGAAAAAGGCGTAGCTGATAGCAAAGCTGCGTTAGAC
GGTGCTCGCTATATTTTAATGGAGCGTTTTGCTGAAGATGCGGGTTTATTAGCGAAAGTCCGTGATTATTTAGCGAAAAA
TGCCGTTATCGTATCAAAAGTGATCGAAGGCAAAGAAACGGAAGGCGCAAAATTTCAAGATTATTTCGACCACCAAGAAT
TATTGAAAAATGTGCCTTCTCACCGGGTATTGGCCATGTTCCGTGGACGTAATGAGGGCATTTTACAATTAAGTTTAAAT
GCTGATCCTGATGCGGAAGAGGGAAGTCGCCAAAGCTATTGTGAAGAAATTATTCGTGATTATTTAGATGTACGTTTTAC
TGGTCAGCCAGCAGATAAATGGCGTGAGCAAGTGATTGCGTGGACGTGGAAAATCAAAGTTTCGTTGCATTTAGAAACGG
AATTAATGGCAAGTTTACGTGAAAAAGCGGAAGAAGAAGCCATAGATGTTTTCGCCCGAAATCTGACCGCACTTTTAATG
GCCGCACCGGCTGGTGCAAAAAGTACCATGGGCTTGGACCCAGGCTTACGTACAGGTGTTAAAGTCGCGGTGGTGGATAA
CACAGGTAAATTATTAGATACCACCACCATTTATCCACACACAGGTCGTGAAGCTGAAGCGCAAGTGGCGATTTTCAGCT
TAATCCGCAAACATAACGTGGAATTAATTGCCATTGGTAATGGTACGGCTTCTCGTGAAACAGAACGTTTTGCGAAAGAC
GTGATTAAAGAAATTAAAGAAAATAAACCACAAACCGTTGTGGTGAGTGAAGCTGGCGCGTCCGTTTATTCAGCTTCTGA
ATTTGCGGCAAATGAATTCCCGAATTTAGATGTATCTTTACGTGGTGCAGTCTCTATTGCACGTCGTTTACAAGATCCAT
TGGCAGAATTAGTGAAAATAGAACCGAAAGCCATTGGTGTAGGGCAATATCAACATGATGTAAACCAAACCCAACTTGCA
CGTAAACTCGATGCAGTAGTGGAAGACTGTGTAAACGCAGTAGGTGTGGATTTGAATACGGCATCCGCACCATTATTAGC
TCGTGTAGCTGGTATGACAAAAACCTTAGCGCAAAACATTGTGGTATATCGTGATGAAAATGGTCGTTTTGAAAGCCGCA
GCGAATTGAAAAAAGTGCCACGTTTAGGGCCAAAAGCCTTTGAGCAATGTGCAGGCTTTATGCGTATTGCAAACGGGAAA
AATCCACTTGATGCTTCAGGTGTTCACCCAGAAGCTTACCCTGTGGTCGAAAAAATTTTGCAAGCTACTGCGCAATCTAT
TCAAGATTTAATGGGTAATGCCGGTGTGGTACGTCAGCTTGATGCAAAACAATTCATTGATGAGCAATTTGGTTTACCGA
CCGTCCAAGATATTTTCAAAGAGTTAGAAAAACCAGGGCGCGATCCCCGTGGTGAATTTAAAACTGCCGTATTCGCAGAA
GGCGTGGAAGAAATAACGGATTTAAAACCAGGCATGATTTTAGAAGGTACTGTCACCAATGTGACTAACTTCGGCGCATT
TGTGGATATTGGTGTTCACCAAGATGGTTTAGTACATATTTCATCATTAAGCGATAAATTCGTAGAAGATCCACATCAAG
TAGTGAAAACTGGCGATATCGTAAAAGTAAAAGTGTTGGAAGTCGATGTGCCGCGTAAACGTATTGCGTTAACAATGCGA
TTAGATGAAAGTGCGGTCAAAAATGACGGCAAATCTGACCGCACTTTATCTGCAAGACCTCGTGGAAATACGCAACGAGA
GGAGCGTAGTTCAAGAGGTAATAATGCGATGGGCAATGCCTTTGCTGATGCGCTAAAAAATTGGAAAAAATAA

Upstream 100 bases:

>100_bases
TTGCCATAATAAAATAAAAGAAAGTTTTTGAATTATATTTGAGCCAGCCCGCTAAAACCAGTATTCTATCTTCGTTTTTT
TATAATAAAGAAGTACGACA

Downstream 100 bases:

>100_bases
CAAGTTATGGGGCGAAATTATTCGCCCTTTTTTTATCGTTTTCCTTTCCCGAAAAGCATCGCCAAAACGGCGATTTTTTG
CTATAATCTCGCCCAATTTT

Product: DNA gyrase subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 770

Protein sequence:

>770_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEERRQTILKSIEEQ
GKLTNELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNNPESTALSFVDAEKGVADSKAALD
GARYILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRVLAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAVVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVVYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMGNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMR
LDESAVKNDGKSDRTLSARPRGNTQREERSSRGNNAMGNAFADALKNWKK

Sequences:

>Translated_770_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEERRQTILKSIEEQ
GKLTNELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNNPESTALSFVDAEKGVADSKAALD
GARYILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRVLAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAVVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVVYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMGNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMR
LDESAVKNDGKSDRTLSARPRGNTQREERSSRGNNAMGNAFADALKNWKK
>Mature_770_residues
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRLIYLRELEERRQTILKSIEEQ
GKLTNELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIEAGLEPLANLLWNEPKNNPESTALSFVDAEKGVADSKAALD
GARYILMERFAEDAGLLAKVRDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRVLAMFRGRNEGILQLSLN
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLREKAEEEAIDVFARNLTALLM
AAPAGAKSTMGLDPGLRTGVKVAVVDNTGKLLDTTTIYPHTGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKD
VIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVVYRDENGRFESRSELKKVPRLGPKAFEQCAGFMRIANGK
NPLDASGVHPEAYPVVEKILQATAQSIQDLMGNAGVVRQLDAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAE
GVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMR
LDESAVKNDGKSDRTLSARPRGNTQREERSSRGNNAMGNAFADALKNWKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=796, Percent_Identity=34.4221105527638, Blast_Score=402, Evalue=1e-112,
Organism=Homo sapiens, GI27597090, Length=715, Percent_Identity=23.6363636363636, Blast_Score=115, Evalue=1e-25,
Organism=Escherichia coli, GI87082262, Length=759, Percent_Identity=72.2002635046113, Blast_Score=1121, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=42.1052631578947, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI145693187, Length=80, Percent_Identity=46.25, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17511129, Length=714, Percent_Identity=29.1316526610644, Blast_Score=234, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17552892, Length=688, Percent_Identity=22.093023255814, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI62484314, Length=783, Percent_Identity=31.6730523627075, Blast_Score=379, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=448, Percent_Identity=22.7678571428571, Blast_Score=84, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85350; Mature: 85350

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
IYLRELEERRQTILKSIEEQGKLTNELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLANLLWNEPKNNPESTALSFVDAEKGVADSKAALDGARYILMERFAEDAGLLAKV
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRVLAMFRGRNEGILQLSLN
HHHHHCCHHHHHHHHCCCCCCCCCHHHHCCHHHHHHCCCCCEEEHHEECCCCCEEEEEEC
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLR
CCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHEEEEEEEEEEEEEHHHHHHHHH
EKAEEEAIDVFARNLTALLMAAPAGAKSTMGLDPGLRTGVKVAVVDNTGKLLDTTTIYPH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
TGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKDVIKEIKENKPQTVVVSEAGA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
SVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
CHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHH
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVVYRDENGRFESRSELKKVP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCC
RLGPKAFEQCAGFMRIANGKNPLDASGVHPEAYPVVEKILQATAQSIQDLMGNAGVVRQL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHC
VTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMR
HHCCCCEEEECCCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHEEEEEE
LDESAVKNDGKSDRTLSARPRGNTQREERSSRGNNAMGNAFADALKNWKK
ECHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLNQQISQIIAAELTVQPQQIFAAIQLLDDGNTIPFIARYRKEATGGLDDTQLRHFETRL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
IYLRELEERRQTILKSIEEQGKLTNELRDKIHATQSKTELEDLYLPYKPKRRTKGQIAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLANLLWNEPKNNPESTALSFVDAEKGVADSKAALDGARYILMERFAEDAGLLAKV
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLAKNAVIVSKVIEGKETEGAKFQDYFDHQELLKNVPSHRVLAMFRGRNEGILQLSLN
HHHHHCCHHHHHHHHCCCCCCCCCHHHHCCHHHHHHCCCCCEEEHHEECCCCCEEEEEEC
ADPDAEEGSRQSYCEEIIRDYLDVRFTGQPADKWREQVIAWTWKIKVSLHLETELMASLR
CCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHEEEEEEEEEEEEEHHHHHHHHH
EKAEEEAIDVFARNLTALLMAAPAGAKSTMGLDPGLRTGVKVAVVDNTGKLLDTTTIYPH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
TGREAEAQVAIFSLIRKHNVELIAIGNGTASRETERFAKDVIKEIKENKPQTVVVSEAGA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
SVYSASEFAANEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQTQLA
CHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHH
RKLDAVVEDCVNAVGVDLNTASAPLLARVAGMTKTLAQNIVVYRDENGRFESRSELKKVP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCC
RLGPKAFEQCAGFMRIANGKNPLDASGVHPEAYPVVEKILQATAQSIQDLMGNAGVVRQL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DAKQFIDEQFGLPTVQDIFKELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTN
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHC
VTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVLEVDVPRKRIALTMR
HHCCCCEEEECCCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHEEEEEE
LDESAVKNDGKSDRTLSARPRGNTQREERSSRGNNAMGNAFADALKNWKK
ECHHHHHCCCCCCCEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]